miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26051 3' -56.5 NC_005342.2 + 17995 0.66 0.619732
Target:  5'- aUGuCAUGaACGCgCUgaucgcgCGCGGCGCgUCg -3'
miRNA:   3'- aGCuGUAC-UGCG-GAa------GCGUCGCGgAG- -5'
26051 3' -56.5 NC_005342.2 + 43080 0.66 0.619732
Target:  5'- gCGAC--GGCGCaCUaUCGCAGCGCg-- -3'
miRNA:   3'- aGCUGuaCUGCG-GA-AGCGUCGCGgag -5'
26051 3' -56.5 NC_005342.2 + 13815 0.66 0.60866
Target:  5'- uUCGGCGacgGGCGCCgcgucgagCGCAuugagcGCGCCg- -3'
miRNA:   3'- -AGCUGUa--CUGCGGaa------GCGU------CGCGGag -5'
26051 3' -56.5 NC_005342.2 + 21084 0.66 0.60866
Target:  5'- gCGACGUGcggcuucacgaACGCCgucggucugaugUUCGCgAGCGCCc- -3'
miRNA:   3'- aGCUGUAC-----------UGCGG------------AAGCG-UCGCGGag -5'
26051 3' -56.5 NC_005342.2 + 6802 0.66 0.60866
Target:  5'- cCGACucgcccGCGUCga-GCAGCGCCUg -3'
miRNA:   3'- aGCUGuac---UGCGGaagCGUCGCGGAg -5'
26051 3' -56.5 NC_005342.2 + 2809 0.66 0.598713
Target:  5'- gCGACGUGaACGCagcuucgaucaaugUCGCGGCGUUUg -3'
miRNA:   3'- aGCUGUAC-UGCGga------------AGCGUCGCGGAg -5'
26051 3' -56.5 NC_005342.2 + 30942 0.66 0.597609
Target:  5'- gCGAgCAUGACGCCaUUggccUGCAGCGUg-- -3'
miRNA:   3'- aGCU-GUACUGCGG-AA----GCGUCGCGgag -5'
26051 3' -56.5 NC_005342.2 + 27286 0.66 0.597609
Target:  5'- cCGGCGUcaucccguGCGCCUccugccacuggCGCAGCGCCg- -3'
miRNA:   3'- aGCUGUAc-------UGCGGAa----------GCGUCGCGGag -5'
26051 3' -56.5 NC_005342.2 + 28237 0.66 0.597609
Target:  5'- gUGAcCGUGACGCgcaCGCGGCGCUc- -3'
miRNA:   3'- aGCU-GUACUGCGgaaGCGUCGCGGag -5'
26051 3' -56.5 NC_005342.2 + 12545 0.66 0.575603
Target:  5'- cCGACAcu-CGCgUUCGCgacugaagGGCGUCUCg -3'
miRNA:   3'- aGCUGUacuGCGgAAGCG--------UCGCGGAG- -5'
26051 3' -56.5 NC_005342.2 + 11888 0.66 0.575603
Target:  5'- cCGGCAUG-CGCagcggCGCGcGCGCCa- -3'
miRNA:   3'- aGCUGUACuGCGgaa--GCGU-CGCGGag -5'
26051 3' -56.5 NC_005342.2 + 5030 0.66 0.575603
Target:  5'- gUUGGCc-GACGUCggCGCGGCGCUg- -3'
miRNA:   3'- -AGCUGuaCUGCGGaaGCGUCGCGGag -5'
26051 3' -56.5 NC_005342.2 + 841 0.66 0.575603
Target:  5'- uUCGACGacUGGCGCgCUggcgGCAGCugcaGCCUUg -3'
miRNA:   3'- -AGCUGU--ACUGCG-GAag--CGUCG----CGGAG- -5'
26051 3' -56.5 NC_005342.2 + 17604 0.66 0.564667
Target:  5'- gUCGugAaGACGCCggccgCGCccGGUGCCg- -3'
miRNA:   3'- -AGCugUaCUGCGGaa---GCG--UCGCGGag -5'
26051 3' -56.5 NC_005342.2 + 17464 0.66 0.564667
Target:  5'- gUCGuCAUGACGg--UCGCcGCGCCg- -3'
miRNA:   3'- -AGCuGUACUGCggaAGCGuCGCGGag -5'
26051 3' -56.5 NC_005342.2 + 9856 0.66 0.561397
Target:  5'- cCGGCGUcACGCCggCGCacccgacacgcgacAGCGCgUCg -3'
miRNA:   3'- aGCUGUAcUGCGGaaGCG--------------UCGCGgAG- -5'
26051 3' -56.5 NC_005342.2 + 34108 0.67 0.553786
Target:  5'- cCGACuucGCGCgg-CGCGGCGCgCUCa -3'
miRNA:   3'- aGCUGuacUGCGgaaGCGUCGCG-GAG- -5'
26051 3' -56.5 NC_005342.2 + 27584 0.67 0.553786
Target:  5'- gUGAUgcccGACGUCgaauagCGCGGCGCCUUc -3'
miRNA:   3'- aGCUGua--CUGCGGaa----GCGUCGCGGAG- -5'
26051 3' -56.5 NC_005342.2 + 7379 0.67 0.542969
Target:  5'- gUCGcCGUGuccuUGCCUUcgacgCGCGGCGCC-Ca -3'
miRNA:   3'- -AGCuGUACu---GCGGAA-----GCGUCGCGGaG- -5'
26051 3' -56.5 NC_005342.2 + 38930 0.67 0.542969
Target:  5'- aUCGGCGUcGACGUg-UCGCAGguCGCCa- -3'
miRNA:   3'- -AGCUGUA-CUGCGgaAGCGUC--GCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.