miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26052 3' -63.9 NC_005342.2 + 39445 0.66 0.288325
Target:  5'- gGGUAUGCCGgUC-GCGCUGU-UCGGCa -3'
miRNA:   3'- -UCGUGCGGCgGGcCGCGACGcAGCUG- -5'
26052 3' -63.9 NC_005342.2 + 11470 0.66 0.288325
Target:  5'- uGCACcuUCGCCUucaucacgaGGCGCUGCGaaGGCg -3'
miRNA:   3'- uCGUGc-GGCGGG---------CCGCGACGCagCUG- -5'
26052 3' -63.9 NC_005342.2 + 10829 0.66 0.288325
Target:  5'- uGCACGCCGCgCaaacCGCgaGCGcCGACg -3'
miRNA:   3'- uCGUGCGGCGgGcc--GCGa-CGCaGCUG- -5'
26052 3' -63.9 NC_005342.2 + 1552 0.66 0.288325
Target:  5'- uAGCGCGCCGCCaguuCGGUaUUG-GUCGGu -3'
miRNA:   3'- -UCGUGCGGCGG----GCCGcGACgCAGCUg -5'
26052 3' -63.9 NC_005342.2 + 26210 0.66 0.288325
Target:  5'- gAGCugGCgguugaGCUCGucgaacuuCGCUGCGUCGAg -3'
miRNA:   3'- -UCGugCGg-----CGGGCc-------GCGACGCAGCUg -5'
26052 3' -63.9 NC_005342.2 + 45597 0.66 0.288325
Target:  5'- cGCcgGCGCCGUCaugGGCuacGCcGCGUCGAUc -3'
miRNA:   3'- uCG--UGCGGCGGg--CCG---CGaCGCAGCUG- -5'
26052 3' -63.9 NC_005342.2 + 29547 0.66 0.284185
Target:  5'- cGGCGCGCCGCCggucgacuggucauuCGcggcgaagcgcGCGCgguaGuCGUCGGCg -3'
miRNA:   3'- -UCGUGCGGCGG---------------GC-----------CGCGa---C-GCAGCUG- -5'
26052 3' -63.9 NC_005342.2 + 17003 0.66 0.281451
Target:  5'- cGGCgcuGCGCCGCgCGGCcGUcGCGacCGGCa -3'
miRNA:   3'- -UCG---UGCGGCGgGCCG-CGaCGCa-GCUG- -5'
26052 3' -63.9 NC_005342.2 + 38398 0.66 0.28077
Target:  5'- cAGCugGCCGCC--GCGCUGaaauucccgcagcCGcCGGCg -3'
miRNA:   3'- -UCGugCGGCGGgcCGCGAC-------------GCaGCUG- -5'
26052 3' -63.9 NC_005342.2 + 16516 0.66 0.274707
Target:  5'- uGGCGCaaCUGCCCGGCGUccgucacGCuGUCGAa -3'
miRNA:   3'- -UCGUGc-GGCGGGCCGCGa------CG-CAGCUg -5'
26052 3' -63.9 NC_005342.2 + 16101 0.66 0.274707
Target:  5'- cAGU-CGCCGCguucgacgugCUGGCGCUuaucGCGUCGGa -3'
miRNA:   3'- -UCGuGCGGCG----------GGCCGCGA----CGCAGCUg -5'
26052 3' -63.9 NC_005342.2 + 447 0.66 0.274707
Target:  5'- uGC-CGCCGCCC-GCGau-UGUCGGCa -3'
miRNA:   3'- uCGuGCGGCGGGcCGCgacGCAGCUG- -5'
26052 3' -63.9 NC_005342.2 + 11033 0.66 0.274707
Target:  5'- cAGCGuCGCgGCggaacucggcaCCGGCGC-GCGUCGugaGCg -3'
miRNA:   3'- -UCGU-GCGgCG-----------GGCCGCGaCGCAGC---UG- -5'
26052 3' -63.9 NC_005342.2 + 29431 0.66 0.27404
Target:  5'- cGGguUGCCGCCggcugcgaaGGcCGCUGCagcguccGUCGGCg -3'
miRNA:   3'- -UCguGCGGCGGg--------CC-GCGACG-------CAGCUG- -5'
26052 3' -63.9 NC_005342.2 + 33151 0.66 0.27271
Target:  5'- cGGCACGCCGuggucugcgaaugaCCUGcucGCGC-GCGUgCGGCg -3'
miRNA:   3'- -UCGUGCGGC--------------GGGC---CGCGaCGCA-GCUG- -5'
26052 3' -63.9 NC_005342.2 + 21892 0.66 0.27271
Target:  5'- aAGCGcCGCCGCUgCGGCGCcacugGCaaauccggcgcaccGUCGAUu -3'
miRNA:   3'- -UCGU-GCGGCGG-GCCGCGa----CG--------------CAGCUG- -5'
26052 3' -63.9 NC_005342.2 + 44248 0.66 0.268094
Target:  5'- uGCAUugauCCGCCCGGgGgUGCG-CGAg -3'
miRNA:   3'- uCGUGc---GGCGGGCCgCgACGCaGCUg -5'
26052 3' -63.9 NC_005342.2 + 2853 0.66 0.268094
Target:  5'- cGGCcuUGCCGaCCUGGCGCUG-GUCu-- -3'
miRNA:   3'- -UCGu-GCGGC-GGGCCGCGACgCAGcug -5'
26052 3' -63.9 NC_005342.2 + 17154 0.66 0.268094
Target:  5'- gGGCcagGCGCCGaaCCUgcaGGCGCUcGCGUCGu- -3'
miRNA:   3'- -UCG---UGCGGC--GGG---CCGCGA-CGCAGCug -5'
26052 3' -63.9 NC_005342.2 + 20549 0.66 0.268094
Target:  5'- uGGcCGCGCCGCUgaucguCGGCGCgucGgGUCG-Cg -3'
miRNA:   3'- -UC-GUGCGGCGG------GCCGCGa--CgCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.