miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26052 5' -53.2 NC_005342.2 + 1451 0.66 0.79707
Target:  5'- -aGACGGcacgcuUGGAcGUGCCgagcaGCGCGGCg -3'
miRNA:   3'- agCUGCUuu----ACUU-CGCGGa----CGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 47014 0.66 0.79707
Target:  5'- -aGGCGAAGUGc-GCGCgaaugCUGCGCcGCa -3'
miRNA:   3'- agCUGCUUUACuuCGCG-----GACGCGcUG- -5'
26052 5' -53.2 NC_005342.2 + 45612 0.66 0.79707
Target:  5'- aCGACGAGGcgcugcucGAGGUGCUUGC-CGAg -3'
miRNA:   3'- aGCUGCUUUa-------CUUCGCGGACGcGCUg -5'
26052 5' -53.2 NC_005342.2 + 33112 0.66 0.787038
Target:  5'- aCGGCGAugccUGcGGCGCggcgaCUGCGCGcCg -3'
miRNA:   3'- aGCUGCUuu--ACuUCGCG-----GACGCGCuG- -5'
26052 5' -53.2 NC_005342.2 + 466 0.66 0.787038
Target:  5'- gUCGGcCGggGUGuacGAG-GCCacggcGCGCGACg -3'
miRNA:   3'- -AGCU-GCuuUAC---UUCgCGGa----CGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 21150 0.66 0.787038
Target:  5'- cUUGACGuGAUGguGCGCUUcGCGCuGCc -3'
miRNA:   3'- -AGCUGCuUUACuuCGCGGA-CGCGcUG- -5'
26052 5' -53.2 NC_005342.2 + 46866 0.66 0.776836
Target:  5'- cUCGACGcAuuUGgcGCGCCgccgcagcgUGCGcCGAUg -3'
miRNA:   3'- -AGCUGC-UuuACuuCGCGG---------ACGC-GCUG- -5'
26052 5' -53.2 NC_005342.2 + 12641 0.66 0.776836
Target:  5'- aUCGACGGGucGAccGCGCCgaacaGCGACa -3'
miRNA:   3'- -AGCUGCUUuaCUu-CGCGGacg--CGCUG- -5'
26052 5' -53.2 NC_005342.2 + 17929 0.66 0.776836
Target:  5'- cUGGCGGGu---GGCGUCgcagGUGCGACg -3'
miRNA:   3'- aGCUGCUUuacuUCGCGGa---CGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 8761 0.66 0.776836
Target:  5'- gUCGcCGGcAAUGccuuGCGCCgGCGUGAUg -3'
miRNA:   3'- -AGCuGCU-UUACuu--CGCGGaCGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 36642 0.66 0.776836
Target:  5'- aCGACGAAcc---GCGCCgccuucaucgcGCGCGACc -3'
miRNA:   3'- aGCUGCUUuacuuCGCGGa----------CGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 16069 0.66 0.776836
Target:  5'- cUCGGCGAGu--AAGCgcguggccgGCCUGC-CGACa -3'
miRNA:   3'- -AGCUGCUUuacUUCG---------CGGACGcGCUG- -5'
26052 5' -53.2 NC_005342.2 + 38296 0.66 0.774776
Target:  5'- uUCG-CGGGcaucGUGAAGCGCCagcuacagccggGCGCGcCg -3'
miRNA:   3'- -AGCuGCUU----UACUUCGCGGa-----------CGCGCuG- -5'
26052 5' -53.2 NC_005342.2 + 16987 0.66 0.766476
Target:  5'- cUGACGAAcaccGAgacGGCGCUgcgccGCGCGGCc -3'
miRNA:   3'- aGCUGCUUua--CU---UCGCGGa----CGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 30790 0.66 0.766476
Target:  5'- aCGACGc----GAGCGCCUGCagguuCGGCg -3'
miRNA:   3'- aGCUGCuuuacUUCGCGGACGc----GCUG- -5'
26052 5' -53.2 NC_005342.2 + 39192 0.66 0.766476
Target:  5'- -aGGCGAAGaugGAAGCGCgCgGCGUaacgGACg -3'
miRNA:   3'- agCUGCUUUa--CUUCGCG-GaCGCG----CUG- -5'
26052 5' -53.2 NC_005342.2 + 35827 0.66 0.766476
Target:  5'- aCGuACGcAAGguuGGCgacgGCCUGCGCGACc -3'
miRNA:   3'- aGC-UGC-UUUacuUCG----CGGACGCGCUG- -5'
26052 5' -53.2 NC_005342.2 + 17326 0.66 0.766476
Target:  5'- gCGAUGAAGgcGAGCGUCgacGCGCucGACg -3'
miRNA:   3'- aGCUGCUUUacUUCGCGGa--CGCG--CUG- -5'
26052 5' -53.2 NC_005342.2 + 26040 0.66 0.766476
Target:  5'- aUCGACGGugcgccgGAuuugccaguGGCGCCgcaGCgGCGGCg -3'
miRNA:   3'- -AGCUGCUuua----CU---------UCGCGGa--CG-CGCUG- -5'
26052 5' -53.2 NC_005342.2 + 9961 0.66 0.759136
Target:  5'- cCGACGuacucuuugcgcgguUGucGGcCGUCUGCGCGACg -3'
miRNA:   3'- aGCUGCuuu------------ACu-UC-GCGGACGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.