miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26053 3' -68.3 NC_005342.2 + 11899 0.66 0.189525
Target:  5'- aGCGGcGCGcGCGCcauUACGcGCGCUCCa- -3'
miRNA:   3'- gCGCC-CGCcCGCG---AUGC-CGCGGGGgc -5'
26053 3' -68.3 NC_005342.2 + 26041 0.66 0.18812
Target:  5'- uCGaCGGuGCGccggauuugccaguGGCGCcgcagcgGCGGCGCUUCCGg -3'
miRNA:   3'- -GC-GCC-CGC--------------CCGCGa------UGCCGCGGGGGC- -5'
26053 3' -68.3 NC_005342.2 + 47283 0.66 0.184878
Target:  5'- uCGCGGGCGGcG-GC-ACGaucGCGCUCaCCGa -3'
miRNA:   3'- -GCGCCCGCC-CgCGaUGC---CGCGGG-GGC- -5'
26053 3' -68.3 NC_005342.2 + 45215 0.66 0.182138
Target:  5'- aGCGagaucgucuacaacuGGCGGGCGg---GGCGCCCCg- -3'
miRNA:   3'- gCGC---------------CCGCCCGCgaugCCGCGGGGgc -5'
26053 3' -68.3 NC_005342.2 + 9624 0.66 0.175884
Target:  5'- -aCGGGCaccacGGGCa--GCGGCGCgCCCGg -3'
miRNA:   3'- gcGCCCG-----CCCGcgaUGCCGCGgGGGC- -5'
26053 3' -68.3 NC_005342.2 + 28217 0.66 0.172829
Target:  5'- gCGCGucCGGGCGCgucacggUgaccgugacgcgcacGCGGCGCUCCUGg -3'
miRNA:   3'- -GCGCccGCCCGCG-------A---------------UGCCGCGGGGGC- -5'
26053 3' -68.3 NC_005342.2 + 17809 0.66 0.171534
Target:  5'- aCGUGGcGCGaGGCagucGCUACGGCGCgCgaauucgguCCGg -3'
miRNA:   3'- -GCGCC-CGC-CCG----CGAUGCCGCGgG---------GGC- -5'
26053 3' -68.3 NC_005342.2 + 22043 0.66 0.166861
Target:  5'- aCGCGGGCGGacagaucGUGC-ACGGCGCguagCgCCa -3'
miRNA:   3'- -GCGCCCGCC-------CGCGaUGCCGCG----GgGGc -5'
26053 3' -68.3 NC_005342.2 + 18602 0.67 0.155084
Target:  5'- gGCGcGGCaGGCGCggGCGGCaaCCCUu -3'
miRNA:   3'- gCGC-CCGcCCGCGa-UGCCGcgGGGGc -5'
26053 3' -68.3 NC_005342.2 + 17931 0.67 0.155084
Target:  5'- gGCGGGUGGcgucgcagGUGCgacgGCGGCcaGCCgCCGu -3'
miRNA:   3'- gCGCCCGCC--------CGCGa---UGCCG--CGGgGGC- -5'
26053 3' -68.3 NC_005342.2 + 1324 0.67 0.154692
Target:  5'- uCGCGGcGCucgcGGCGCUGCagcaugaacagcaGGCGCUCgCGg -3'
miRNA:   3'- -GCGCC-CGc---CCGCGAUG-------------CCGCGGGgGC- -5'
26053 3' -68.3 NC_005342.2 + 11683 0.67 0.151201
Target:  5'- gCGcCGGGCGGcGUGCU--GGCGUCCUg- -3'
miRNA:   3'- -GC-GCCCGCC-CGCGAugCCGCGGGGgc -5'
26053 3' -68.3 NC_005342.2 + 35671 0.67 0.147406
Target:  5'- gCGCGaGGCuGGCGCgcaggACGccgcaaugcGCGCCgCCGg -3'
miRNA:   3'- -GCGC-CCGcCCGCGa----UGC---------CGCGGgGGC- -5'
26053 3' -68.3 NC_005342.2 + 29612 0.67 0.147406
Target:  5'- gCGCGauCGGGCcacGC-GCGGCGUCCUCGg -3'
miRNA:   3'- -GCGCccGCCCG---CGaUGCCGCGGGGGC- -5'
26053 3' -68.3 NC_005342.2 + 602 0.67 0.143698
Target:  5'- aGCGGGCcGGUGCUGCcaguGaCGCCCgUGa -3'
miRNA:   3'- gCGCCCGcCCGCGAUGc---C-GCGGGgGC- -5'
26053 3' -68.3 NC_005342.2 + 43900 0.67 0.143698
Target:  5'- gGCaaGGGC-GGCGCUuuGCGGCGUUCCg- -3'
miRNA:   3'- gCG--CCCGcCCGCGA--UGCCGCGGGGgc -5'
26053 3' -68.3 NC_005342.2 + 28495 0.67 0.140076
Target:  5'- gCGCGGGuCGcGGCGgcGCGGCuGCCCaucaCGu -3'
miRNA:   3'- -GCGCCC-GC-CCGCgaUGCCG-CGGGg---GC- -5'
26053 3' -68.3 NC_005342.2 + 22065 0.67 0.140076
Target:  5'- gGCGGcgaaGCGcGGCGCU-UGGCGCUCgCGc -3'
miRNA:   3'- gCGCC----CGC-CCGCGAuGCCGCGGGgGC- -5'
26053 3' -68.3 NC_005342.2 + 12262 0.68 0.129705
Target:  5'- gGCaccGGCGGcGCGCauUGCGGCGUCCUg- -3'
miRNA:   3'- gCGc--CCGCC-CGCG--AUGCCGCGGGGgc -5'
26053 3' -68.3 NC_005342.2 + 19486 0.68 0.129705
Target:  5'- uGCGaucGGCGcuGGCGCgcugGCGGCGCUCgUGg -3'
miRNA:   3'- gCGC---CCGC--CCGCGa---UGCCGCGGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.