miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26053 5' -51.9 NC_005342.2 + 4512 0.66 0.86216
Target:  5'- cAACGcGGGccauuguUGCGAcGCGUCAggugccaACCCGCGc -3'
miRNA:   3'- -UUGCaCUU-------ACGCU-UGCAGU-------UGGGCGC- -5'
26053 5' -51.9 NC_005342.2 + 29865 0.66 0.855311
Target:  5'- ----cGAAUGCGGACGUagcgcGCUCGCa -3'
miRNA:   3'- uugcaCUUACGCUUGCAgu---UGGGCGc -5'
26053 5' -51.9 NC_005342.2 + 26475 0.66 0.846525
Target:  5'- -uCGUGAAUGU--GCGUCgcGugCCGCa -3'
miRNA:   3'- uuGCACUUACGcuUGCAG--UugGGCGc -5'
26053 5' -51.9 NC_005342.2 + 2614 0.66 0.846525
Target:  5'- gAACGUGAucUGCGAGCaGUuguugcgacCGACCgGCa -3'
miRNA:   3'- -UUGCACUu-ACGCUUG-CA---------GUUGGgCGc -5'
26053 5' -51.9 NC_005342.2 + 25183 0.66 0.837498
Target:  5'- cGCGUcucGAAcucacUGCGcgacucGACGUCGacGCCCGCGa -3'
miRNA:   3'- uUGCA---CUU-----ACGC------UUGCAGU--UGGGCGC- -5'
26053 5' -51.9 NC_005342.2 + 22534 0.66 0.837498
Target:  5'- gAACGUGAuguUGcCGAGCGaCGAgCgCGCGg -3'
miRNA:   3'- -UUGCACUu--AC-GCUUGCaGUUgG-GCGC- -5'
26053 5' -51.9 NC_005342.2 + 9530 0.66 0.828239
Target:  5'- --gGUGAagGCGAGCGcCGGCggCUGCGg -3'
miRNA:   3'- uugCACUuaCGCUUGCaGUUG--GGCGC- -5'
26053 5' -51.9 NC_005342.2 + 8195 0.67 0.81876
Target:  5'- uGCGUGGcagGauGACGcCGGCCCGCGc -3'
miRNA:   3'- uUGCACUua-CgcUUGCaGUUGGGCGC- -5'
26053 5' -51.9 NC_005342.2 + 23350 0.67 0.80809
Target:  5'- uGCGcGuuUGUGAGCGUCAccgugccGCCCGUc -3'
miRNA:   3'- uUGCaCuuACGCUUGCAGU-------UGGGCGc -5'
26053 5' -51.9 NC_005342.2 + 47317 0.67 0.799182
Target:  5'- cGGCGauGGUGCGAAaucgGUgGACCCGCa -3'
miRNA:   3'- -UUGCacUUACGCUUg---CAgUUGGGCGc -5'
26053 5' -51.9 NC_005342.2 + 41302 0.67 0.789106
Target:  5'- cACGUGAAgcgGCGGAUG-CGcGCCUGCu -3'
miRNA:   3'- uUGCACUUa--CGCUUGCaGU-UGGGCGc -5'
26053 5' -51.9 NC_005342.2 + 15586 0.68 0.72541
Target:  5'- cACGguuucgGCGAACGUCGugCCGUu -3'
miRNA:   3'- uUGCacuua-CGCUUGCAGUugGGCGc -5'
26053 5' -51.9 NC_005342.2 + 29809 0.68 0.714371
Target:  5'- cGACG-GAAcGCGucgauGCG-CGACCCGCGc -3'
miRNA:   3'- -UUGCaCUUaCGCu----UGCaGUUGGGCGC- -5'
26053 5' -51.9 NC_005342.2 + 22963 0.68 0.714371
Target:  5'- cAGCGUGAcggGCGGcgcggacgcagACGUCGcGCUCGCGa -3'
miRNA:   3'- -UUGCACUua-CGCU-----------UGCAGU-UGGGCGC- -5'
26053 5' -51.9 NC_005342.2 + 22390 0.69 0.703245
Target:  5'- aAGCGcUGuuUGCGcagcugaucgccAAUGUCGACCCGCu -3'
miRNA:   3'- -UUGC-ACuuACGC------------UUGCAGUUGGGCGc -5'
26053 5' -51.9 NC_005342.2 + 18175 0.69 0.680784
Target:  5'- cGGCGUGccggguGAUGCGcuCGUCGugCgCGCGg -3'
miRNA:   3'- -UUGCAC------UUACGCuuGCAGUugG-GCGC- -5'
26053 5' -51.9 NC_005342.2 + 38765 0.69 0.669472
Target:  5'- cGCGaUGGAUGCGAA-GUCGgugcGCaCCGCGa -3'
miRNA:   3'- uUGC-ACUUACGCUUgCAGU----UG-GGCGC- -5'
26053 5' -51.9 NC_005342.2 + 37235 0.7 0.651301
Target:  5'- cACGUGAagaucagucguuccgGUGCGcugcucguGCGUCAGCUCGCc -3'
miRNA:   3'- uUGCACU---------------UACGCu-------UGCAGUUGGGCGc -5'
26053 5' -51.9 NC_005342.2 + 19859 0.7 0.646749
Target:  5'- uGGCGcGAGUGCGAcCGaUUAcGCCCGCGc -3'
miRNA:   3'- -UUGCaCUUACGCUuGC-AGU-UGGGCGC- -5'
26053 5' -51.9 NC_005342.2 + 38546 0.7 0.646749
Target:  5'- aGACGgcgaaccgGAcgGCGuGCG-CAGCCCGCa -3'
miRNA:   3'- -UUGCa-------CUuaCGCuUGCaGUUGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.