miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26054 5' -61.1 NC_005342.2 + 1842 0.66 0.398724
Target:  5'- aGCCCCGcUCGGGUGcccuuuGCucaccgacuguccuaGGCcGCGCCa -3'
miRNA:   3'- gCGGGGCuAGUCCAU------CG---------------CCG-UGCGGa -5'
26054 5' -61.1 NC_005342.2 + 47635 0.66 0.395171
Target:  5'- aGCgCCGA-CGGGcauuucgGGCGGUACgGCCa -3'
miRNA:   3'- gCGgGGCUaGUCCa------UCGCCGUG-CGGa -5'
26054 5' -61.1 NC_005342.2 + 27031 0.66 0.395171
Target:  5'- aGCCgCCGGgcgUCGGGUuGCaauccuGCGCGCCa -3'
miRNA:   3'- gCGG-GGCU---AGUCCAuCGc-----CGUGCGGa -5'
26054 5' -61.1 NC_005342.2 + 35598 0.66 0.395171
Target:  5'- gCGCgCCGggCGGGgcGCGGgCggGCGCUa -3'
miRNA:   3'- -GCGgGGCuaGUCCauCGCC-G--UGCGGa -5'
26054 5' -61.1 NC_005342.2 + 23383 0.66 0.395171
Target:  5'- aGUCCgGA-CAGG--GCGGuCACGCCg -3'
miRNA:   3'- gCGGGgCUaGUCCauCGCC-GUGCGGa -5'
26054 5' -61.1 NC_005342.2 + 44074 0.66 0.395171
Target:  5'- uGCCCgagauucaaauCGGaCAGGUgcgcugcucGGCGGCGCGCgCUc -3'
miRNA:   3'- gCGGG-----------GCUaGUCCA---------UCGCCGUGCG-GA- -5'
26054 5' -61.1 NC_005342.2 + 41294 0.66 0.386379
Target:  5'- gCGCCCCG--CAcGUgaAGCGGCggaugcGCGCCUg -3'
miRNA:   3'- -GCGGGGCuaGUcCA--UCGCCG------UGCGGA- -5'
26054 5' -61.1 NC_005342.2 + 14860 0.66 0.383767
Target:  5'- uCGCCguucuacgCGAUCGGGcAGCaggcguuccacgacGGCGCGCCg -3'
miRNA:   3'- -GCGGg-------GCUAGUCCaUCG--------------CCGUGCGGa -5'
26054 5' -61.1 NC_005342.2 + 9599 0.66 0.377717
Target:  5'- gCGCaCCGG-CuGccGGCGGCGCGCCUg -3'
miRNA:   3'- -GCGgGGCUaGuCcaUCGCCGUGCGGA- -5'
26054 5' -61.1 NC_005342.2 + 13743 0.66 0.369187
Target:  5'- gCGCgguaaCCaGAUUuauuGUGGCGGCGCGCCa -3'
miRNA:   3'- -GCGg----GG-CUAGuc--CAUCGCCGUGCGGa -5'
26054 5' -61.1 NC_005342.2 + 38351 0.66 0.369187
Target:  5'- cCGUUCUGAUCGGcccgGGCGGCACGg-- -3'
miRNA:   3'- -GCGGGGCUAGUCca--UCGCCGUGCgga -5'
26054 5' -61.1 NC_005342.2 + 14223 0.66 0.36079
Target:  5'- gCGCCUCuuUCgAGccgagcGGCGGCACGCCUu -3'
miRNA:   3'- -GCGGGGcuAG-UCca----UCGCCGUGCGGA- -5'
26054 5' -61.1 NC_005342.2 + 9343 0.66 0.352527
Target:  5'- cCGUgCCGAUCAGcGcgaAGCGGCGCGg-- -3'
miRNA:   3'- -GCGgGGCUAGUC-Ca--UCGCCGUGCgga -5'
26054 5' -61.1 NC_005342.2 + 5948 0.66 0.352527
Target:  5'- aCGCCUCGGUCGGcaccuuGCGGCcgguCGCUUu -3'
miRNA:   3'- -GCGGGGCUAGUCcau---CGCCGu---GCGGA- -5'
26054 5' -61.1 NC_005342.2 + 18397 0.67 0.344398
Target:  5'- uCGCCgCGAaugacCAGucgaccGGCGGCGCGCCg -3'
miRNA:   3'- -GCGGgGCUa----GUCca----UCGCCGUGCGGa -5'
26054 5' -61.1 NC_005342.2 + 8264 0.67 0.344398
Target:  5'- -uCCuuGAUgUAGGUAgGCGGCGCGCg- -3'
miRNA:   3'- gcGGggCUA-GUCCAU-CGCCGUGCGga -5'
26054 5' -61.1 NC_005342.2 + 45244 0.67 0.328549
Target:  5'- gCGCCCCGcauUCGagcGGUGGUGGU-CGCUUu -3'
miRNA:   3'- -GCGGGGCu--AGU---CCAUCGCCGuGCGGA- -5'
26054 5' -61.1 NC_005342.2 + 723 0.67 0.320829
Target:  5'- gCGCCUCGuUCAGc--GCGGCAguCGCCg -3'
miRNA:   3'- -GCGGGGCuAGUCcauCGCCGU--GCGGa -5'
26054 5' -61.1 NC_005342.2 + 38403 0.67 0.320064
Target:  5'- gGCgCUGA--AGGUGGCGGCAacgaacuCGCCa -3'
miRNA:   3'- gCGgGGCUagUCCAUCGCCGU-------GCGGa -5'
26054 5' -61.1 NC_005342.2 + 3490 0.67 0.305061
Target:  5'- cCGCCgUCGGUCAGGUAGgccauuucguaguCGaGCuGCGCCUc -3'
miRNA:   3'- -GCGG-GGCUAGUCCAUC-------------GC-CG-UGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.