miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26055 3' -53.4 NC_005342.2 + 19562 0.66 0.763229
Target:  5'- ---aCGGUCGGCgcGGCAC-AAGGGGAAu -3'
miRNA:   3'- cuucGCUAGCCG--CCGUGcUUUCUCUU- -5'
26055 3' -53.4 NC_005342.2 + 29556 0.66 0.741783
Target:  5'- cGAGGCGuugcgcuUCGGaCGGCACGAGcauGAu -3'
miRNA:   3'- -CUUCGCu------AGCC-GCCGUGCUUucuCUu -5'
26055 3' -53.4 NC_005342.2 + 22957 0.66 0.719859
Target:  5'- --uGCGAUCagcgugacgGGCGGCGCGGAcGcAGAc -3'
miRNA:   3'- cuuCGCUAG---------CCGCCGUGCUUuC-UCUu -5'
26055 3' -53.4 NC_005342.2 + 3281 0.66 0.719859
Target:  5'- --uGCGcgCGGCGGCGCGcgGuuGAAu -3'
miRNA:   3'- cuuCGCuaGCCGCCGUGCuuUcuCUU- -5'
26055 3' -53.4 NC_005342.2 + 7184 0.67 0.652245
Target:  5'- --uGCgGAUUGGCGGCGCGAAAc---- -3'
miRNA:   3'- cuuCG-CUAGCCGCCGUGCUUUcucuu -5'
26055 3' -53.4 NC_005342.2 + 24427 0.68 0.640836
Target:  5'- --cGCaGAUCGGCGGCuaccCGAAAGGc-- -3'
miRNA:   3'- cuuCG-CUAGCCGCCGu---GCUUUCUcuu -5'
26055 3' -53.4 NC_005342.2 + 41414 0.68 0.606604
Target:  5'- cGGGCGGcaacuUCgGGCGGCACGGcgcgaucaacgAGGAGAu -3'
miRNA:   3'- cUUCGCU-----AG-CCGCCGUGCU-----------UUCUCUu -5'
26055 3' -53.4 NC_005342.2 + 47284 0.69 0.572581
Target:  5'- --cGCGggCGGCGGCACGAu------ -3'
miRNA:   3'- cuuCGCuaGCCGCCGUGCUuucucuu -5'
26055 3' -53.4 NC_005342.2 + 18421 0.69 0.561333
Target:  5'- --cGCGAUCGGCGGCGuCGAcaccgcGAGc- -3'
miRNA:   3'- cuuCGCUAGCCGCCGU-GCUuu----CUCuu -5'
26055 3' -53.4 NC_005342.2 + 35812 0.7 0.474201
Target:  5'- aGAAGCGGcUCGGCGcgagaCACGAGAG-GAAa -3'
miRNA:   3'- -CUUCGCU-AGCCGCc----GUGCUUUCuCUU- -5'
26055 3' -53.4 NC_005342.2 + 34400 1.07 0.001608
Target:  5'- cGAAGCGAUCGGCGGCACGAAAGAGAAa -3'
miRNA:   3'- -CUUCGCUAGCCGCCGUGCUUUCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.