miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26055 5' -64.2 NC_005342.2 + 28876 0.66 0.270708
Target:  5'- ---aCGGUCacacgGGCCgcGCCGaGUGGCGACg -3'
miRNA:   3'- guagGCCGGa----CCGG--CGGC-CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 37404 0.66 0.270708
Target:  5'- --gCCGGCCcGGCgCG-UGGCGGCu-- -3'
miRNA:   3'- guaGGCCGGaCCG-GCgGCCGCCGuug -5'
26055 5' -64.2 NC_005342.2 + 40551 0.66 0.270708
Target:  5'- aCGUCgaagaGGCgcgcgccuuCUGGUCGCCGGCGauggucgcGCGACu -3'
miRNA:   3'- -GUAGg----CCG---------GACCGGCGGCCGC--------CGUUG- -5'
26055 5' -64.2 NC_005342.2 + 7521 0.66 0.264159
Target:  5'- uCGUCUugcucaGGUCggacaucGCCGUCGGCGGCAGa -3'
miRNA:   3'- -GUAGG------CCGGac-----CGGCGGCCGCCGUUg -5'
26055 5' -64.2 NC_005342.2 + 20510 0.66 0.264159
Target:  5'- --gCCGGCC--GCCGCCGcGCcguucgcuGGCGGCc -3'
miRNA:   3'- guaGGCCGGacCGGCGGC-CG--------CCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 44325 0.66 0.257739
Target:  5'- --aCCGuGCCgcuGCCGCCGcGCGaGCAGg -3'
miRNA:   3'- guaGGC-CGGac-CGGCGGC-CGC-CGUUg -5'
26055 5' -64.2 NC_005342.2 + 29437 0.66 0.245283
Target:  5'- gCcgCCGGCUgcgaaGGCCGCugcagcguccguCGGCgugccGGCAGCg -3'
miRNA:   3'- -GuaGGCCGGa----CCGGCG------------GCCG-----CCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 17283 0.66 0.245283
Target:  5'- --gUCGcGCCUgacGGCCGCCGGCGuaucGCcgGACg -3'
miRNA:   3'- guaGGC-CGGA---CCGGCGGCCGC----CG--UUG- -5'
26055 5' -64.2 NC_005342.2 + 27012 0.66 0.244674
Target:  5'- gCGUCCGGCCccguggcguaGCCGCCgGGCGucggguuGCAAUc -3'
miRNA:   3'- -GUAGGCCGGac--------CGGCGG-CCGC-------CGUUG- -5'
26055 5' -64.2 NC_005342.2 + 8633 0.66 0.239245
Target:  5'- --cCCGGCUUGcucgugacgguGCCGUCGGCGuuCAGCa -3'
miRNA:   3'- guaGGCCGGAC-----------CGGCGGCCGCc-GUUG- -5'
26055 5' -64.2 NC_005342.2 + 17641 0.66 0.239245
Target:  5'- gCGUCCGGCCUGGgguuucUCGgCGaaGCGGuCGAUg -3'
miRNA:   3'- -GUAGGCCGGACC------GGCgGC--CGCC-GUUG- -5'
26055 5' -64.2 NC_005342.2 + 8942 0.66 0.239245
Target:  5'- --gCgGGCUggaucgugcGGCCGUgcgCGGCGGCGACc -3'
miRNA:   3'- guaGgCCGGa--------CCGGCG---GCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 20148 0.66 0.233331
Target:  5'- --aCCGaaaaaGCCUacucGGCCGCCGGCucgGGCGcACa -3'
miRNA:   3'- guaGGC-----CGGA----CCGGCGGCCG---CCGU-UG- -5'
26055 5' -64.2 NC_005342.2 + 4922 0.67 0.225827
Target:  5'- gCGUCUGGUUguaccagggcgcaaUGGCCgaGCCuuGCGGCAGCg -3'
miRNA:   3'- -GUAGGCCGG--------------ACCGG--CGGc-CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 13938 0.67 0.221872
Target:  5'- -uUCgGGCC-GGCgGCCGGUGcGCGc- -3'
miRNA:   3'- guAGgCCGGaCCGgCGGCCGC-CGUug -5'
26055 5' -64.2 NC_005342.2 + 6807 0.67 0.221872
Target:  5'- -cUCCGGCggGGCacuCGUCGGCuaccGGCGGCu -3'
miRNA:   3'- guAGGCCGgaCCG---GCGGCCG----CCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 38342 0.67 0.216325
Target:  5'- aCAgCCGGgCgcaGGCgCGCCGcCGGCAGCc -3'
miRNA:   3'- -GUaGGCCgGa--CCG-GCGGCcGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 28630 0.67 0.216325
Target:  5'- --gCCGGCgCguacuuGCCGUCGGUGcGCAGCg -3'
miRNA:   3'- guaGGCCG-Gac----CGGCGGCCGC-CGUUG- -5'
26055 5' -64.2 NC_005342.2 + 3183 0.67 0.214684
Target:  5'- --gCCGGCCcGGCgCGCCGcccgccccgaugacGCcgGGCAGCa -3'
miRNA:   3'- guaGGCCGGaCCG-GCGGC--------------CG--CCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 27742 0.67 0.210896
Target:  5'- aAUCUGGUC-GGCCGCCGaGCccgucaGGCGcACg -3'
miRNA:   3'- gUAGGCCGGaCCGGCGGC-CG------CCGU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.