miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26055 5' -64.2 NC_005342.2 + 30808 0.67 0.210896
Target:  5'- gGUUCGgcGCCUGGcCCGUCaGCGGCGc- -3'
miRNA:   3'- gUAGGC--CGGACC-GGCGGcCGCCGUug -5'
26055 5' -64.2 NC_005342.2 + 27742 0.67 0.210896
Target:  5'- aAUCUGGUC-GGCCGCCGaGCccgucaGGCGcACg -3'
miRNA:   3'- gUAGGCCGGaCCGGCGGC-CG------CCGU-UG- -5'
26055 5' -64.2 NC_005342.2 + 5561 0.67 0.207696
Target:  5'- uGUgCGGCCaucgGGCaugcgcacguucagGCCGuGCGGCAGCu -3'
miRNA:   3'- gUAgGCCGGa---CCGg-------------CGGC-CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 24278 0.67 0.205586
Target:  5'- uCcgCCGGCCacgaugcaGCCGCCGGaagcCGGUGGCg -3'
miRNA:   3'- -GuaGGCCGGac------CGGCGGCC----GCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 23994 0.67 0.200391
Target:  5'- aGUCgGGCCUGuucccGCaGCCGGCgGGCAc- -3'
miRNA:   3'- gUAGgCCGGAC-----CGgCGGCCG-CCGUug -5'
26055 5' -64.2 NC_005342.2 + 14146 0.67 0.199878
Target:  5'- --cCCGauGCCgGGCCGCuCGuccggguGCGGCAGCa -3'
miRNA:   3'- guaGGC--CGGaCCGGCG-GC-------CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 38381 0.67 0.199878
Target:  5'- --aCCGGCCgauGCCgcGCCGGCuggcgcugaagguGGCGGCa -3'
miRNA:   3'- guaGGCCGGac-CGG--CGGCCG-------------CCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 21775 0.68 0.195311
Target:  5'- cCAUUCGGCgaaGuGCCGCgCGaGUGGCAGCu -3'
miRNA:   3'- -GUAGGCCGga-C-CGGCG-GC-CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 1594 0.68 0.195311
Target:  5'- gCAUCCgGGUCgaaaGcGUCGUCGGCGGCGu- -3'
miRNA:   3'- -GUAGG-CCGGa---C-CGGCGGCCGCCGUug -5'
26055 5' -64.2 NC_005342.2 + 40404 0.68 0.190344
Target:  5'- aCGUCCugcgcaugGGUCU-GCCGCCGaCGGCGAUg -3'
miRNA:   3'- -GUAGG--------CCGGAcCGGCGGCcGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 26781 0.68 0.185489
Target:  5'- --cCCGaGCa-GGCCgGCCuGCGGCAGCg -3'
miRNA:   3'- guaGGC-CGgaCCGG-CGGcCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 30217 0.68 0.185489
Target:  5'- gCGUgCGGCCgaccaGGCUGCCGGC--CAGCu -3'
miRNA:   3'- -GUAgGCCGGa----CCGGCGGCCGccGUUG- -5'
26055 5' -64.2 NC_005342.2 + 3608 0.68 0.184531
Target:  5'- uGUCCauuucgaaauacGCCUGcUCGCgCGGCGGCAGCg -3'
miRNA:   3'- gUAGGc-----------CGGACcGGCG-GCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 42946 0.68 0.180742
Target:  5'- aCAgCCGGCCgccUGGCCGCCuGUcaaGcGCGACg -3'
miRNA:   3'- -GUaGGCCGG---ACCGGCGGcCG---C-CGUUG- -5'
26055 5' -64.2 NC_005342.2 + 29068 0.68 0.180274
Target:  5'- aCAggCGGCCUucgaugcguucugGGCgCcCCGGCGGCAAUg -3'
miRNA:   3'- -GUagGCCGGA-------------CCG-GcGGCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 39019 0.68 0.176104
Target:  5'- --cCCgGGgCUGGCagccgauuCGCuCGGCGGCGGCg -3'
miRNA:   3'- guaGG-CCgGACCG--------GCG-GCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 31990 0.68 0.176104
Target:  5'- -uUCCGGa-UGGCgcggGUCGGCGGCGAUg -3'
miRNA:   3'- guAGGCCggACCGg---CGGCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 44877 0.68 0.171572
Target:  5'- --gUCGGCCcgauacUGGCCGCgcuugcugaugCGcGCGGCAGCu -3'
miRNA:   3'- guaGGCCGG------ACCGGCG-----------GC-CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 38244 0.68 0.171572
Target:  5'- gCAUCCGGCgCUcauGUCGCCGacGCGGCGu- -3'
miRNA:   3'- -GUAGGCCG-GAc--CGGCGGC--CGCCGUug -5'
26055 5' -64.2 NC_005342.2 + 22004 0.69 0.167145
Target:  5'- cCAgcgCCGcGUaCUGGCCGCCGGCauCGACg -3'
miRNA:   3'- -GUa--GGC-CG-GACCGGCGGCCGccGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.