miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26055 5' -64.2 NC_005342.2 + 30396 0.8 0.020985
Target:  5'- cCGUUCGcGCC--GCCGCCGGCGGCGGCa -3'
miRNA:   3'- -GUAGGC-CGGacCGGCGGCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 5008 0.69 0.16282
Target:  5'- aCAggCGGCCaGGCgGCCGGCuguuGGcCGACg -3'
miRNA:   3'- -GUagGCCGGaCCGgCGGCCG----CC-GUUG- -5'
26055 5' -64.2 NC_005342.2 + 44877 0.68 0.171572
Target:  5'- --gUCGGCCcgauacUGGCCGCgcuugcugaugCGcGCGGCAGCu -3'
miRNA:   3'- guaGGCCGG------ACCGGCG-----------GC-CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 40551 0.66 0.270708
Target:  5'- aCGUCgaagaGGCgcgcgccuuCUGGUCGCCGGCGauggucgcGCGACu -3'
miRNA:   3'- -GUAGg----CCG---------GACCGGCGGCCGC--------CGUUG- -5'
26055 5' -64.2 NC_005342.2 + 9588 0.74 0.068422
Target:  5'- --aUCGGCCgguugcgcaccGGCUGCCGGCGGCGc- -3'
miRNA:   3'- guaGGCCGGa----------CCGGCGGCCGCCGUug -5'
26055 5' -64.2 NC_005342.2 + 1317 0.73 0.076216
Target:  5'- gAUCaCGGCC-GGUugcaggauuuucuUGCCGGCGGCGGCc -3'
miRNA:   3'- gUAG-GCCGGaCCG-------------GCGGCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 13510 0.72 0.090137
Target:  5'- -cUCgCGGCgUuGCCGCCGGCGGCcaGGCc -3'
miRNA:   3'- guAG-GCCGgAcCGGCGGCCGCCG--UUG- -5'
26055 5' -64.2 NC_005342.2 + 30939 0.71 0.103316
Target:  5'- uCAUgCCGGUCgcgacGGCCGCgCGGC-GCAGCg -3'
miRNA:   3'- -GUA-GGCCGGa----CCGGCG-GCCGcCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 2716 0.7 0.128228
Target:  5'- cCGUCaCGGCCgagauugcGGCCGCCGuGcCGGUcGCg -3'
miRNA:   3'- -GUAG-GCCGGa-------CCGGCGGC-C-GCCGuUG- -5'
26055 5' -64.2 NC_005342.2 + 25396 0.69 0.158179
Target:  5'- cCGUCCGGCgaucgcgCUuGCaguguGCCGGCGGUAGCc -3'
miRNA:   3'- -GUAGGCCG-------GAcCGg----CGGCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 22170 0.69 0.146513
Target:  5'- gUcgCCGGC--GGCaGCCGGCGGCGGu -3'
miRNA:   3'- -GuaGGCCGgaCCGgCGGCCGCCGUUg -5'
26055 5' -64.2 NC_005342.2 + 24204 0.71 0.115145
Target:  5'- --aCCGGCCgccUGGCCGCCGuaaaaCGGCGc- -3'
miRNA:   3'- guaGGCCGG---ACCGGCGGCc----GCCGUug -5'
26055 5' -64.2 NC_005342.2 + 19490 0.76 0.048969
Target:  5'- --aUCGGCgCUGGCgCGCUGGCGGCGc- -3'
miRNA:   3'- guaGGCCG-GACCG-GCGGCCGCCGUug -5'
26055 5' -64.2 NC_005342.2 + 2648 0.69 0.154472
Target:  5'- --aCCGGCa--GCCugcagcgucgcGCCGGCGGCGGCc -3'
miRNA:   3'- guaGGCCGgacCGG-----------CGGCCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 2375 0.74 0.059546
Target:  5'- --gCCGgcggucGCCUGGUCGCCGuacaGCGGCAACg -3'
miRNA:   3'- guaGGC------CGGACCGGCGGC----CGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 13870 0.71 0.10908
Target:  5'- --gCCGGCacgGGCUGCgCGGCGGCc-- -3'
miRNA:   3'- guaGGCCGga-CCGGCG-GCCGCCGuug -5'
26055 5' -64.2 NC_005342.2 + 30660 0.69 0.154472
Target:  5'- aCGUCCGGCgaua-CGCCGGCGGCc-- -3'
miRNA:   3'- -GUAGGCCGgaccgGCGGCCGCCGuug -5'
26055 5' -64.2 NC_005342.2 + 25665 0.69 0.16282
Target:  5'- --cCCGGCC--GUCGCgaaGGCGGCGACc -3'
miRNA:   3'- guaGGCCGGacCGGCGg--CCGCCGUUG- -5'
26055 5' -64.2 NC_005342.2 + 44731 0.74 0.068232
Target:  5'- uGUCCGGCCgcucgaccgcgcgUGG-CGCUGGCGGCGcGCa -3'
miRNA:   3'- gUAGGCCGG-------------ACCgGCGGCCGCCGU-UG- -5'
26055 5' -64.2 NC_005342.2 + 18521 0.73 0.083012
Target:  5'- ---gCGGCCUucGCaGCCGGCGGCAACc -3'
miRNA:   3'- guagGCCGGAc-CGgCGGCCGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.