miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26056 5' -61.3 NC_005342.2 + 30367 0.66 0.39658
Target:  5'- gCGUGC-GCUGCUCGAGcACCuucaugaagccguucGCGCc -3'
miRNA:   3'- aGCGCGuCGACGGGCUCaUGG---------------CGCGc -5'
26056 5' -61.3 NC_005342.2 + 7400 0.66 0.393049
Target:  5'- aCGCGCGGC-GCCC-AGaGCUGCaCGa -3'
miRNA:   3'- aGCGCGUCGaCGGGcUCaUGGCGcGC- -5'
26056 5' -61.3 NC_005342.2 + 11203 0.66 0.393049
Target:  5'- aUCGCGCuGCUGUCC-AGUugCcCGUu -3'
miRNA:   3'- -AGCGCGuCGACGGGcUCAugGcGCGc -5'
26056 5' -61.3 NC_005342.2 + 45313 0.66 0.393049
Target:  5'- aCGCuGCAGgCUGCCgGuGUcGCCGC-CGa -3'
miRNA:   3'- aGCG-CGUC-GACGGgCuCA-UGGCGcGC- -5'
26056 5' -61.3 NC_005342.2 + 24675 0.66 0.384312
Target:  5'- aCGCGgcgccgauCAGCUGCaugCCGAu--CCGCGCGc -3'
miRNA:   3'- aGCGC--------GUCGACG---GGCUcauGGCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 47562 0.66 0.384312
Target:  5'- cCGCGCAGcCUGUCuUGAucaaggAUCGCGCGc -3'
miRNA:   3'- aGCGCGUC-GACGG-GCUca----UGGCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 14153 0.66 0.375705
Target:  5'- cCGgGCcGCUcGUCCGGGUGCgGCaGCa -3'
miRNA:   3'- aGCgCGuCGA-CGGGCUCAUGgCG-CGc -5'
26056 5' -61.3 NC_005342.2 + 2856 0.66 0.374852
Target:  5'- gUCGCgGCGGCgaGgCUGAuguuggcagagacGUGCUGCGCGg -3'
miRNA:   3'- -AGCG-CGUCGa-CgGGCU-------------CAUGGCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 39660 0.66 0.374852
Target:  5'- gCGCGUaacgcauAGCgggGCgCGAGccCCGCGCGc -3'
miRNA:   3'- aGCGCG-------UCGa--CGgGCUCauGGCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 22659 0.66 0.367229
Target:  5'- gUCGC-CGGCgucgGCCCG-GUugCGaCGCc -3'
miRNA:   3'- -AGCGcGUCGa---CGGGCuCAugGC-GCGc -5'
26056 5' -61.3 NC_005342.2 + 2976 0.66 0.367229
Target:  5'- cUCGC-CGGCgcguccGCCgGAcGUAgCGCGCGa -3'
miRNA:   3'- -AGCGcGUCGa-----CGGgCU-CAUgGCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 18527 0.66 0.367229
Target:  5'- uUCGCagccgGCGGCaaCCCGGGUgcggcaGCCGgCGCGg -3'
miRNA:   3'- -AGCG-----CGUCGacGGGCUCA------UGGC-GCGC- -5'
26056 5' -61.3 NC_005342.2 + 677 0.66 0.367229
Target:  5'- aUCGUGCcGCcGCCCGcgAGcGCCGUgGCGa -3'
miRNA:   3'- -AGCGCGuCGaCGGGC--UCaUGGCG-CGC- -5'
26056 5' -61.3 NC_005342.2 + 47813 0.66 0.366389
Target:  5'- aUGCGCGaugucguGCUGCUCG-GUGCCgacgagGCGCa -3'
miRNA:   3'- aGCGCGU-------CGACGGGCuCAUGG------CGCGc -5'
26056 5' -61.3 NC_005342.2 + 10835 0.66 0.362207
Target:  5'- cCGCGCAaaccGCgaGCgCCGAcGUaggacgaugaggacgGCCGCGCGa -3'
miRNA:   3'- aGCGCGU----CGa-CG-GGCU-CA---------------UGGCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 34014 0.66 0.358886
Target:  5'- cUCGCGCGcaccggccGCcgGCCCGAaGUcgccaaggcgGCCGCGUu -3'
miRNA:   3'- -AGCGCGU--------CGa-CGGGCU-CA----------UGGCGCGc -5'
26056 5' -61.3 NC_005342.2 + 8951 0.66 0.358886
Target:  5'- aUCGUGCGGCcgUGCgCGGcGgcgACCGaCGCGc -3'
miRNA:   3'- -AGCGCGUCG--ACGgGCU-Ca--UGGC-GCGC- -5'
26056 5' -61.3 NC_005342.2 + 36070 0.66 0.358886
Target:  5'- gCGCGCcGCUGCgcaugCCGG--GCCGCGaCGa -3'
miRNA:   3'- aGCGCGuCGACG-----GGCUcaUGGCGC-GC- -5'
26056 5' -61.3 NC_005342.2 + 27451 0.66 0.350675
Target:  5'- -gGCGCGGCggcgGCCgGcAGcgGuuGCGCGg -3'
miRNA:   3'- agCGCGUCGa---CGGgC-UCa-UggCGCGC- -5'
26056 5' -61.3 NC_005342.2 + 7363 0.67 0.3426
Target:  5'- -gGCGCAGUaGauaCCGAGU--CGCGCGa -3'
miRNA:   3'- agCGCGUCGaCg--GGCUCAugGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.