miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26057 3' -48.6 NC_005342.2 + 26815 0.66 0.965589
Target:  5'- aCGgcccgGCCUGCAgcgucguagcgaGUGCUGUCGCGu -3'
miRNA:   3'- cGCacuagUGGACGU------------UAUGAUAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 31193 0.66 0.957699
Target:  5'- uUGUcGAUCGCUuugucgGCGuucucGUACUGUCGCGc -3'
miRNA:   3'- cGCA-CUAGUGGa-----CGU-----UAUGAUAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 26655 0.66 0.957699
Target:  5'- aGCGUGAUCGCgccggCUGcCGAUaGCgucagGUCGCc -3'
miRNA:   3'- -CGCACUAGUG-----GAC-GUUA-UGa----UAGCGc -5'
26057 3' -48.6 NC_005342.2 + 46666 0.66 0.957699
Target:  5'- uCGUGuucaAUCAgCUGCAAUucACgccgAUCGCGu -3'
miRNA:   3'- cGCAC----UAGUgGACGUUA--UGa---UAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 25747 0.66 0.953323
Target:  5'- gGCGUGAaggUCGgUUGCGggACguugGUCGUGg -3'
miRNA:   3'- -CGCACU---AGUgGACGUuaUGa---UAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 33464 0.68 0.90742
Target:  5'- cGCGUGAUCAuguCgUGCGAUGCga-CGUu -3'
miRNA:   3'- -CGCACUAGU---GgACGUUAUGauaGCGc -5'
26057 3' -48.6 NC_005342.2 + 2616 0.68 0.90742
Target:  5'- aCGUGAUCugCgaGCAGU--UGUUGCGa -3'
miRNA:   3'- cGCACUAGugGa-CGUUAugAUAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 31320 0.68 0.906722
Target:  5'- cGCgGUGcagCACCggGCAggucgaaGUGCUGUCGCa -3'
miRNA:   3'- -CG-CACua-GUGGa-CGU-------UAUGAUAGCGc -5'
26057 3' -48.6 NC_005342.2 + 9049 0.68 0.906722
Target:  5'- uGCGUGAgCGCCUcGCGGUaaaucuggcuugcGCUGUCaaGCGc -3'
miRNA:   3'- -CGCACUaGUGGA-CGUUA-------------UGAUAG--CGC- -5'
26057 3' -48.6 NC_005342.2 + 41355 0.68 0.899575
Target:  5'- cGCGaucgaguUGAUUACCUGCGAcUGCgg-CGCu -3'
miRNA:   3'- -CGC-------ACUAGUGGACGUU-AUGauaGCGc -5'
26057 3' -48.6 NC_005342.2 + 32806 0.71 0.793551
Target:  5'- aGCGUGAUCACgaGCc---CUucGUCGCGc -3'
miRNA:   3'- -CGCACUAGUGgaCGuuauGA--UAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 31568 0.71 0.793551
Target:  5'- aGCG-GGUUguuuGCCUGCAucUGCUgaAUCGCGg -3'
miRNA:   3'- -CGCaCUAG----UGGACGUu-AUGA--UAGCGC- -5'
26057 3' -48.6 NC_005342.2 + 4246 0.71 0.783162
Target:  5'- uGUGUGGUCACggcgUGCAGUGCc--CGCGg -3'
miRNA:   3'- -CGCACUAGUGg---ACGUUAUGauaGCGC- -5'
26057 3' -48.6 NC_005342.2 + 15510 0.72 0.750996
Target:  5'- cGCGUGAcguUCugCUcGCcg-GCUAUCGCu -3'
miRNA:   3'- -CGCACU---AGugGA-CGuuaUGAUAGCGc -5'
26057 3' -48.6 NC_005342.2 + 40565 0.73 0.660269
Target:  5'- cGCGccuucUGGUCGCCgGCGAUGgUcgCGCGa -3'
miRNA:   3'- -CGC-----ACUAGUGGaCGUUAUgAuaGCGC- -5'
26057 3' -48.6 NC_005342.2 + 33411 1.12 0.002654
Target:  5'- cGCGUGAUCACCUGCAAUACUAUCGCGu -3'
miRNA:   3'- -CGCACUAGUGGACGUUAUGAUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.