miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26057 5' -50.5 NC_005342.2 + 44869 0.66 0.916535
Target:  5'- cGUCGAGAacuGGUUCG-GCGCGcuGUCGa -3'
miRNA:   3'- -CGGCUUUg--UCAAGCaCGCGCacUAGU- -5'
26057 5' -50.5 NC_005342.2 + 10572 0.66 0.90584
Target:  5'- gGCCGAcgAGCGGgUCGgGCGCGcgcucgaugaaugucUGAUCc -3'
miRNA:   3'- -CGGCU--UUGUCaAGCaCGCGC---------------ACUAGu -5'
26057 5' -50.5 NC_005342.2 + 39291 0.66 0.903049
Target:  5'- gGUCGGuuuGCGuUUCG-GaCGCGUGAUCAu -3'
miRNA:   3'- -CGGCUu--UGUcAAGCaC-GCGCACUAGU- -5'
26057 5' -50.5 NC_005342.2 + 4065 0.68 0.84605
Target:  5'- aGCCGGAacgugaaGCAGUagGcGCGCGUcGUCGg -3'
miRNA:   3'- -CGGCUU-------UGUCAagCaCGCGCAcUAGU- -5'
26057 5' -50.5 NC_005342.2 + 30566 0.68 0.837889
Target:  5'- gGCCGcgcugugcGAGCAGUUCGaUGCGC-UGcUCGa -3'
miRNA:   3'- -CGGC--------UUUGUCAAGC-ACGCGcACuAGU- -5'
26057 5' -50.5 NC_005342.2 + 38771 0.68 0.837889
Target:  5'- aGCCGGAcgGCgAGUacgcgcgacUCGUGCGcCGUGcGUCGg -3'
miRNA:   3'- -CGGCUU--UG-UCA---------AGCACGC-GCAC-UAGU- -5'
26057 5' -50.5 NC_005342.2 + 5059 0.68 0.827657
Target:  5'- cGUCGAcuuuCAGUucaucggUCGUGUGCGUGAc-- -3'
miRNA:   3'- -CGGCUuu--GUCA-------AGCACGCGCACUagu -5'
26057 5' -50.5 NC_005342.2 + 17105 0.68 0.818122
Target:  5'- cGCCGAGcagcagcgcaugcGCgAGgaagUCGUGCGCGUcGAUa- -3'
miRNA:   3'- -CGGCUU-------------UG-UCa---AGCACGCGCA-CUAgu -5'
26057 5' -50.5 NC_005342.2 + 14811 0.69 0.789317
Target:  5'- uGCCGGAcucgcggcuACGGUUCG-GCGCGcaGUCGc -3'
miRNA:   3'- -CGGCUU---------UGUCAAGCaCGCGCacUAGU- -5'
26057 5' -50.5 NC_005342.2 + 25029 0.7 0.714261
Target:  5'- cGCCGGAAUcggguAGUUCGUcGCGCcguaguUGAUCGc -3'
miRNA:   3'- -CGGCUUUG-----UCAAGCA-CGCGc-----ACUAGU- -5'
26057 5' -50.5 NC_005342.2 + 41591 0.7 0.714261
Target:  5'- cGCCcGAACAGcccgaaUUCGaccUGCGCGUGAUUc -3'
miRNA:   3'- -CGGcUUUGUC------AAGC---ACGCGCACUAGu -5'
26057 5' -50.5 NC_005342.2 + 15390 0.71 0.680523
Target:  5'- cGCCGcga-AGUUCGUGCGCGccaGGUUg -3'
miRNA:   3'- -CGGCuuugUCAAGCACGCGCa--CUAGu -5'
26057 5' -50.5 NC_005342.2 + 8919 0.71 0.657761
Target:  5'- cGCCGgcGCuGUccaucgCGUGCGCGggcugGAUCGu -3'
miRNA:   3'- -CGGCuuUGuCAa-----GCACGCGCa----CUAGU- -5'
26057 5' -50.5 NC_005342.2 + 20019 0.72 0.623454
Target:  5'- aGUCGAuGCcGUUCGUGCcGCuuGUGAUCGa -3'
miRNA:   3'- -CGGCUuUGuCAAGCACG-CG--CACUAGU- -5'
26057 5' -50.5 NC_005342.2 + 4231 0.73 0.577871
Target:  5'- uGCCGc-GCAcGUUCGUGCGCccGGUCGa -3'
miRNA:   3'- -CGGCuuUGU-CAAGCACGCGcaCUAGU- -5'
26057 5' -50.5 NC_005342.2 + 2258 0.73 0.544157
Target:  5'- cGCCGucGGCAGgUCGUGCGcCGUGGcCGg -3'
miRNA:   3'- -CGGCu-UUGUCaAGCACGC-GCACUaGU- -5'
26057 5' -50.5 NC_005342.2 + 32380 0.74 0.49597
Target:  5'- cGCCGAAACcGUgaccgacgagcagCGUGCGacCGUGAUCGa -3'
miRNA:   3'- -CGGCUUUGuCAa------------GCACGC--GCACUAGU- -5'
26057 5' -50.5 NC_005342.2 + 33447 1.11 0.002
Target:  5'- uGCCGAAACAGUUCGUGCGCGUGAUCAu -3'
miRNA:   3'- -CGGCUUUGUCAAGCACGCGCACUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.