miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26058 3' -58 NC_005342.2 + 6008 0.66 0.534998
Target:  5'- cCAUUUGUugUCGGCCGucgugcggucgaaguCGAGCcGCa -3'
miRNA:   3'- -GUGGACGugAGCCGGCu--------------GUUCGaCGc -5'
26058 3' -58 NC_005342.2 + 41943 0.66 0.533934
Target:  5'- gACC-GCACgaCGGCCGACAacaaauGGUaUGCGu -3'
miRNA:   3'- gUGGaCGUGa-GCCGGCUGU------UCG-ACGC- -5'
26058 3' -58 NC_005342.2 + 5263 0.66 0.533934
Target:  5'- gCGCCgccCGCUCGuccGCCGGCGAgGgUGCGg -3'
miRNA:   3'- -GUGGac-GUGAGC---CGGCUGUU-CgACGC- -5'
26058 3' -58 NC_005342.2 + 30675 0.66 0.523342
Target:  5'- gACgCUGCGC-CGGCCGGCGuucacgucgaaGGCaaucUGCa -3'
miRNA:   3'- gUG-GACGUGaGCCGGCUGU-----------UCG----ACGc -5'
26058 3' -58 NC_005342.2 + 45636 0.66 0.512831
Target:  5'- cCAgCUGCGCaaCGGCCGcACGGuGCUcGCGu -3'
miRNA:   3'- -GUgGACGUGa-GCCGGC-UGUU-CGA-CGC- -5'
26058 3' -58 NC_005342.2 + 36111 0.66 0.512831
Target:  5'- gCGCCcGU-CUCGGCCGACcGGCaGaCGg -3'
miRNA:   3'- -GUGGaCGuGAGCCGGCUGuUCGaC-GC- -5'
26058 3' -58 NC_005342.2 + 25702 0.66 0.512831
Target:  5'- aCGCCcGCgagaauggcuuGCUC-GCCGGCcAGCUGCa -3'
miRNA:   3'- -GUGGaCG-----------UGAGcCGGCUGuUCGACGc -5'
26058 3' -58 NC_005342.2 + 44674 0.66 0.502407
Target:  5'- -uCCUGCGCgcgcacgucggCGGCCGACu-GCaGCa -3'
miRNA:   3'- guGGACGUGa----------GCCGGCUGuuCGaCGc -5'
26058 3' -58 NC_005342.2 + 32568 0.66 0.502407
Target:  5'- gGCCUGCucgAgUCGGUCGAU--GUUGCGc -3'
miRNA:   3'- gUGGACG---UgAGCCGGCUGuuCGACGC- -5'
26058 3' -58 NC_005342.2 + 29406 0.66 0.499299
Target:  5'- uCGCCgccGCGC-CGGCUGccGCAcccggguugccgccGGCUGCGa -3'
miRNA:   3'- -GUGGa--CGUGaGCCGGC--UGU--------------UCGACGC- -5'
26058 3' -58 NC_005342.2 + 35519 0.66 0.492078
Target:  5'- -cCCUGCAagUCGGCaaaaaACAacGGCUGCGg -3'
miRNA:   3'- guGGACGUg-AGCCGgc---UGU--UCGACGC- -5'
26058 3' -58 NC_005342.2 + 41321 0.66 0.492078
Target:  5'- gCGCCUGCuCgagCGcGCCGAgCGcGCUGCc -3'
miRNA:   3'- -GUGGACGuGa--GC-CGGCU-GUuCGACGc -5'
26058 3' -58 NC_005342.2 + 45128 0.66 0.492078
Target:  5'- gACCUgGCACUCGGUuuCGGCGGcGCcgacgGCGc -3'
miRNA:   3'- gUGGA-CGUGAGCCG--GCUGUU-CGa----CGC- -5'
26058 3' -58 NC_005342.2 + 4839 0.66 0.481847
Target:  5'- uGCCUGCGCgggCGGCUG-CGGGaccauaGCGa -3'
miRNA:   3'- gUGGACGUGa--GCCGGCuGUUCga----CGC- -5'
26058 3' -58 NC_005342.2 + 43363 0.66 0.481847
Target:  5'- gGCCUGCACcaccaggaUCGcaacaaGCuCGACGGGUUGUGg -3'
miRNA:   3'- gUGGACGUG--------AGC------CG-GCUGUUCGACGC- -5'
26058 3' -58 NC_005342.2 + 813 0.66 0.48083
Target:  5'- uCGCCUGCgcgucGCUCGGCgcggguguuucgaCGACuGGCgcgcugGCGg -3'
miRNA:   3'- -GUGGACG-----UGAGCCG-------------GCUGuUCGa-----CGC- -5'
26058 3' -58 NC_005342.2 + 3272 0.66 0.48083
Target:  5'- --gCUGCAgUCGGCCGccgacgugcgcgcGCAggauAGCUGCc -3'
miRNA:   3'- gugGACGUgAGCCGGC-------------UGU----UCGACGc -5'
26058 3' -58 NC_005342.2 + 43010 0.67 0.471721
Target:  5'- gGCCggcuaUGCGCUCGuGCCGAuCGAGCcGaCGc -3'
miRNA:   3'- gUGG-----ACGUGAGC-CGGCU-GUUCGaC-GC- -5'
26058 3' -58 NC_005342.2 + 32784 0.67 0.471721
Target:  5'- gGCCUGCuGC-CGGCCGuGCGGaUUGCGa -3'
miRNA:   3'- gUGGACG-UGaGCCGGC-UGUUcGACGC- -5'
26058 3' -58 NC_005342.2 + 251 0.67 0.471721
Target:  5'- cCGCCgaGCACggucaCGGUCGACGu-CUGCGg -3'
miRNA:   3'- -GUGGa-CGUGa----GCCGGCUGUucGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.