miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26058 3' -58 NC_005342.2 + 47071 0.67 0.461703
Target:  5'- aCGCC-GCACgaaagccgaaaUCGaaGCCGACAAgGCUGCa -3'
miRNA:   3'- -GUGGaCGUG-----------AGC--CGGCUGUU-CGACGc -5'
26058 3' -58 NC_005342.2 + 27628 0.67 0.461703
Target:  5'- gUACCcGUcgGCaCGGCCGGCAAGCcugGCa -3'
miRNA:   3'- -GUGGaCG--UGaGCCGGCUGUUCGa--CGc -5'
26058 3' -58 NC_005342.2 + 20782 0.67 0.45872
Target:  5'- aCGCCUGCGCUCcaagccauuauccaGGUCGAgacaaCGGGUaGCGg -3'
miRNA:   3'- -GUGGACGUGAG--------------CCGGCU-----GUUCGaCGC- -5'
26058 3' -58 NC_005342.2 + 8989 0.67 0.451799
Target:  5'- gCGCCUGC---CGGCCGcuCGGGgUGCGg -3'
miRNA:   3'- -GUGGACGugaGCCGGCu-GUUCgACGC- -5'
26058 3' -58 NC_005342.2 + 123 0.67 0.451799
Target:  5'- cCGCCUGCGCcucgUCGGCac-CGAGCaGCa -3'
miRNA:   3'- -GUGGACGUG----AGCCGgcuGUUCGaCGc -5'
26058 3' -58 NC_005342.2 + 16932 0.67 0.451799
Target:  5'- gCGCC-GUGCUCGGCguCGGCGcAGgUGCGg -3'
miRNA:   3'- -GUGGaCGUGAGCCG--GCUGU-UCgACGC- -5'
26058 3' -58 NC_005342.2 + 47182 0.67 0.445913
Target:  5'- -uCCUGCGC-CGGCgacCGGCAcgcucaaggucgaagGGCUGCa -3'
miRNA:   3'- guGGACGUGaGCCG---GCUGU---------------UCGACGc -5'
26058 3' -58 NC_005342.2 + 15479 0.67 0.432346
Target:  5'- uGCC-GCGCUuaUGGCCGGC-GGCaGCGa -3'
miRNA:   3'- gUGGaCGUGA--GCCGGCUGuUCGaCGC- -5'
26058 3' -58 NC_005342.2 + 7824 0.67 0.422805
Target:  5'- gGCCUGCGC-CGGCCauuuCcAGCUcGCGc -3'
miRNA:   3'- gUGGACGUGaGCCGGcu--GuUCGA-CGC- -5'
26058 3' -58 NC_005342.2 + 24668 0.68 0.404107
Target:  5'- gGCUUGUACgCGgcGCCGAUcAGCUGCa -3'
miRNA:   3'- gUGGACGUGaGC--CGGCUGuUCGACGc -5'
26058 3' -58 NC_005342.2 + 3812 0.68 0.404107
Target:  5'- gCGCCUcGCACgc-GCCGGCAAGCgaacccgGCa -3'
miRNA:   3'- -GUGGA-CGUGagcCGGCUGUUCGa------CGc -5'
26058 3' -58 NC_005342.2 + 14342 0.68 0.394957
Target:  5'- uGCUUGCGCUUcaGGUCGGCGAucGcCUGCGc -3'
miRNA:   3'- gUGGACGUGAG--CCGGCUGUU--C-GACGC- -5'
26058 3' -58 NC_005342.2 + 9576 0.68 0.385941
Target:  5'- aGCCgGCGCggcaUCGGCCGguugcGCAccGGCUGCc -3'
miRNA:   3'- gUGGaCGUG----AGCCGGC-----UGU--UCGACGc -5'
26058 3' -58 NC_005342.2 + 20452 0.68 0.385941
Target:  5'- aGCCUGCGC-CGGUCGugAcGCaGCc -3'
miRNA:   3'- gUGGACGUGaGCCGGCugUuCGaCGc -5'
26058 3' -58 NC_005342.2 + 38526 0.68 0.377062
Target:  5'- gCGCCcGCACUUGGCgCG-CAAGacgGCGa -3'
miRNA:   3'- -GUGGaCGUGAGCCG-GCuGUUCga-CGC- -5'
26058 3' -58 NC_005342.2 + 45707 0.69 0.351263
Target:  5'- gGCCUGcCACUCGGCgccgagggcUGGCAcGGcCUGCGc -3'
miRNA:   3'- gUGGAC-GUGAGCCG---------GCUGU-UC-GACGC- -5'
26058 3' -58 NC_005342.2 + 30210 0.69 0.342946
Target:  5'- aGCCcGaGCgugCGGCCGAcCAGGCUGCc -3'
miRNA:   3'- gUGGaCgUGa--GCCGGCU-GUUCGACGc -5'
26058 3' -58 NC_005342.2 + 17485 0.69 0.334772
Target:  5'- uGCUUGCGCUCGaccgcaCCGAUcuGCUGCa -3'
miRNA:   3'- gUGGACGUGAGCc-----GGCUGuuCGACGc -5'
26058 3' -58 NC_005342.2 + 42680 0.69 0.326742
Target:  5'- aACCcGCACccucgcCGGCgGACGAGCggGCGg -3'
miRNA:   3'- gUGGaCGUGa-----GCCGgCUGUUCGa-CGC- -5'
26058 3' -58 NC_005342.2 + 39330 0.69 0.326742
Target:  5'- aCGCgUGCAUgaacauccuagCGGCCGACu-GCUGCc -3'
miRNA:   3'- -GUGgACGUGa----------GCCGGCUGuuCGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.