miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26058 5' -49.9 NC_005342.2 + 27726 0.66 0.929393
Target:  5'- -gCGCGAUcgCGGCGcGAaUCUGGUcGGc -3'
miRNA:   3'- cgGCGUUGuaGUCGC-UUaAGACCA-CC- -5'
26058 5' -49.9 NC_005342.2 + 1496 0.66 0.923395
Target:  5'- cGCCGaguGCGUCGGUcAGUUC-GGUGa -3'
miRNA:   3'- -CGGCgu-UGUAGUCGcUUAAGaCCACc -5'
26058 5' -49.9 NC_005342.2 + 30955 0.66 0.917096
Target:  5'- gGCCGCGcgGCG-CAGCGccgUCUcGGUGu -3'
miRNA:   3'- -CGGCGU--UGUaGUCGCuuaAGA-CCACc -5'
26058 5' -49.9 NC_005342.2 + 17049 0.67 0.888924
Target:  5'- cGCCGgAACAUCGGCGAAccg-GGc-- -3'
miRNA:   3'- -CGGCgUUGUAGUCGCUUaagaCCacc -5'
26058 5' -49.9 NC_005342.2 + 26068 0.68 0.86479
Target:  5'- cGCCGCAGCggCGGCGcuuccgGAUUCgGGcaGGc -3'
miRNA:   3'- -CGGCGUUGuaGUCGC------UUAAGaCCa-CC- -5'
26058 5' -49.9 NC_005342.2 + 30015 0.68 0.838283
Target:  5'- uUCGUAGC--CGGCGAGUUUgucaaUGGUGGa -3'
miRNA:   3'- cGGCGUUGuaGUCGCUUAAG-----ACCACC- -5'
26058 5' -49.9 NC_005342.2 + 1429 0.68 0.838283
Target:  5'- uGCUGCAGCuUCGuGCG-AUUCUGGa-- -3'
miRNA:   3'- -CGGCGUUGuAGU-CGCuUAAGACCacc -5'
26058 5' -49.9 NC_005342.2 + 3664 0.69 0.819414
Target:  5'- aGCCGUcGCGUCGuagcuGCGGAUcgUCUGGUu- -3'
miRNA:   3'- -CGGCGuUGUAGU-----CGCUUA--AGACCAcc -5'
26058 5' -49.9 NC_005342.2 + 47742 0.71 0.725287
Target:  5'- gGCUGUgcuACAUCGGCGcGUUCUGGc-- -3'
miRNA:   3'- -CGGCGu--UGUAGUCGCuUAAGACCacc -5'
26058 5' -49.9 NC_005342.2 + 44528 0.73 0.588552
Target:  5'- cGCCGCGACGcUCGGCGAGgacaUGGa-- -3'
miRNA:   3'- -CGGCGUUGU-AGUCGCUUaag-ACCacc -5'
26058 5' -49.9 NC_005342.2 + 33335 1.14 0.001562
Target:  5'- cGCCGCAACAUCAGCGAAUUCUGGUGGu -3'
miRNA:   3'- -CGGCGUUGUAGUCGCUUAAGACCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.