miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26059 5' -53.2 NC_005342.2 + 28325 0.66 0.833057
Target:  5'- uGACGGCcaGCGucggccgcgcucgccGCGcUCGCCGuGACCu -3'
miRNA:   3'- gUUGCCG--UGC---------------UGCaAGCGGCuUUGGc -5'
26059 5' -53.2 NC_005342.2 + 11405 0.66 0.829422
Target:  5'- aUAGCGGC-CGGCGaUgGCCGuAGCgCGc -3'
miRNA:   3'- -GUUGCCGuGCUGCaAgCGGCuUUG-GC- -5'
26059 5' -53.2 NC_005342.2 + 46296 0.66 0.828508
Target:  5'- uCGACGauguacuGCACGACGgaagCGCUGuuuccGACCGc -3'
miRNA:   3'- -GUUGC-------CGUGCUGCaa--GCGGCu----UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 45257 0.66 0.823907
Target:  5'- uGACgGGCACGAacaaccUCGCCGAcgagcucggccugucGGCCGc -3'
miRNA:   3'- gUUG-CCGUGCUgca---AGCGGCU---------------UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 46005 0.66 0.820188
Target:  5'- aCAACuGGCACGAUa-UCGCCGGuuACUc -3'
miRNA:   3'- -GUUG-CCGUGCUGcaAGCGGCUu-UGGc -5'
26059 5' -53.2 NC_005342.2 + 30494 0.66 0.820188
Target:  5'- -cGCGGCgaccgucaugACGACGUUCGCCa------ -3'
miRNA:   3'- guUGCCG----------UGCUGCAAGCGGcuuuggc -5'
26059 5' -53.2 NC_005342.2 + 8979 0.66 0.820188
Target:  5'- -cGCGGCGCGuGCGccUGCCG--GCCGc -3'
miRNA:   3'- guUGCCGUGC-UGCaaGCGGCuuUGGC- -5'
26059 5' -53.2 NC_005342.2 + 39318 0.66 0.820188
Target:  5'- cCGACGGCACcgucacgagcaaGcCGggCGCCGc-GCCGa -3'
miRNA:   3'- -GUUGCCGUG------------CuGCaaGCGGCuuUGGC- -5'
26059 5' -53.2 NC_005342.2 + 17000 0.66 0.820188
Target:  5'- aGACGGCGCugcgccgcGCGgcCGUCGcGACCGg -3'
miRNA:   3'- gUUGCCGUGc-------UGCaaGCGGCuUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 22195 0.66 0.820188
Target:  5'- uCGGCGGCuGCGGCcugcucgaUGCCGAGACgGg -3'
miRNA:   3'- -GUUGCCG-UGCUGcaa-----GCGGCUUUGgC- -5'
26059 5' -53.2 NC_005342.2 + 30983 0.66 0.810752
Target:  5'- -cGCGGCgACGGCGUaUGCCGcGAGuuGc -3'
miRNA:   3'- guUGCCG-UGCUGCAaGCGGC-UUUggC- -5'
26059 5' -53.2 NC_005342.2 + 21676 0.66 0.810752
Target:  5'- uCGACGGCGCGGUGcgCGCCacauACUGc -3'
miRNA:   3'- -GUUGCCGUGCUGCaaGCGGcuu-UGGC- -5'
26059 5' -53.2 NC_005342.2 + 32975 0.66 0.810752
Target:  5'- -cGCGGCGuCGGCG-UCGgCGGuccgcuAACCGg -3'
miRNA:   3'- guUGCCGU-GCUGCaAGCgGCU------UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 2837 0.66 0.810752
Target:  5'- -cGCGGCguuugcgaACGACGUcgcggCGgCGAGGCUGa -3'
miRNA:   3'- guUGCCG--------UGCUGCAa----GCgGCUUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 29537 0.66 0.801124
Target:  5'- uGAUGGCGauCGGCGcgcCGCCGGucGACUGg -3'
miRNA:   3'- gUUGCCGU--GCUGCaa-GCGGCU--UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 28648 0.66 0.801124
Target:  5'- --uCGGUGCGcaGCGgcgCGCCGAGGCaCGc -3'
miRNA:   3'- guuGCCGUGC--UGCaa-GCGGCUUUG-GC- -5'
26059 5' -53.2 NC_005342.2 + 10012 0.66 0.801124
Target:  5'- gAACGGCGCGGCGcgcUUGCuCGAcuCgGg -3'
miRNA:   3'- gUUGCCGUGCUGCa--AGCG-GCUuuGgC- -5'
26059 5' -53.2 NC_005342.2 + 16962 0.66 0.801124
Target:  5'- gAACGGCaacucGCGGCauaCGCCGucGCCGc -3'
miRNA:   3'- gUUGCCG-----UGCUGcaaGCGGCuuUGGC- -5'
26059 5' -53.2 NC_005342.2 + 45226 0.66 0.791315
Target:  5'- gCGAcCGGCACGGCGgcCGCaaucucGGCCGu -3'
miRNA:   3'- -GUU-GCCGUGCUGCaaGCGgcu---UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 41389 0.66 0.791315
Target:  5'- gGGCGGCGCGcCGUggCGgCGAuGCgGg -3'
miRNA:   3'- gUUGCCGUGCuGCAa-GCgGCUuUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.