Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26059 | 5' | -53.2 | NC_005342.2 | + | 28325 | 0.66 | 0.833057 |
Target: 5'- uGACGGCcaGCGucggccgcgcucgccGCGcUCGCCGuGACCu -3' miRNA: 3'- gUUGCCG--UGC---------------UGCaAGCGGCuUUGGc -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 41389 | 0.66 | 0.791315 |
Target: 5'- gGGCGGCGCGcCGUggCGgCGAuGCgGg -3' miRNA: 3'- gUUGCCGUGCuGCAa-GCgGCUuUGgC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 45226 | 0.66 | 0.791315 |
Target: 5'- gCGAcCGGCACGGCGgcCGCaaucucGGCCGu -3' miRNA: 3'- -GUU-GCCGUGCUGCaaGCGgcu---UUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 45305 | 0.66 | 0.788339 |
Target: 5'- --cCGGCGCGACGcugcaggcugccggUgucgcCGCCGAuacGCCGg -3' miRNA: 3'- guuGCCGUGCUGC--------------Aa----GCGGCUu--UGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 18554 | 0.66 | 0.791315 |
Target: 5'- gCAGcCGGCGCGGCGgcgaauCCGAAcCCGu -3' miRNA: 3'- -GUU-GCCGUGCUGCaagc--GGCUUuGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 8966 | 0.66 | 0.791315 |
Target: 5'- gCGGCGGCgaccgACGcGCGUUCGCgGcuuGCCa -3' miRNA: 3'- -GUUGCCG-----UGC-UGCAAGCGgCuu-UGGc -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 16962 | 0.66 | 0.801124 |
Target: 5'- gAACGGCaacucGCGGCauaCGCCGucGCCGc -3' miRNA: 3'- gUUGCCG-----UGCUGcaaGCGGCuuUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 28648 | 0.66 | 0.801124 |
Target: 5'- --uCGGUGCGcaGCGgcgCGCCGAGGCaCGc -3' miRNA: 3'- guuGCCGUGC--UGCaa-GCGGCUUUG-GC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 29537 | 0.66 | 0.801124 |
Target: 5'- uGAUGGCGauCGGCGcgcCGCCGGucGACUGg -3' miRNA: 3'- gUUGCCGU--GCUGCaa-GCGGCU--UUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 43261 | 0.66 | 0.791315 |
Target: 5'- ---gGGCGCGACGUaUC-CCGAugaguCCGg -3' miRNA: 3'- guugCCGUGCUGCA-AGcGGCUuu---GGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 10012 | 0.66 | 0.801124 |
Target: 5'- gAACGGCGCGGCGcgcUUGCuCGAcuCgGg -3' miRNA: 3'- gUUGCCGUGCUGCa--AGCG-GCUuuGgC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 30983 | 0.66 | 0.810752 |
Target: 5'- -cGCGGCgACGGCGUaUGCCGcGAGuuGc -3' miRNA: 3'- guUGCCG-UGCUGCAaGCGGC-UUUggC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 11405 | 0.66 | 0.829422 |
Target: 5'- aUAGCGGC-CGGCGaUgGCCGuAGCgCGc -3' miRNA: 3'- -GUUGCCGuGCUGCaAgCGGCuUUG-GC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 46296 | 0.66 | 0.828508 |
Target: 5'- uCGACGauguacuGCACGACGgaagCGCUGuuuccGACCGc -3' miRNA: 3'- -GUUGC-------CGUGCUGCaa--GCGGCu----UUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 45257 | 0.66 | 0.823907 |
Target: 5'- uGACgGGCACGAacaaccUCGCCGAcgagcucggccugucGGCCGc -3' miRNA: 3'- gUUG-CCGUGCUgca---AGCGGCU---------------UUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 17000 | 0.66 | 0.820188 |
Target: 5'- aGACGGCGCugcgccgcGCGgcCGUCGcGACCGg -3' miRNA: 3'- gUUGCCGUGc-------UGCaaGCGGCuUUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 39318 | 0.66 | 0.820188 |
Target: 5'- cCGACGGCACcgucacgagcaaGcCGggCGCCGc-GCCGa -3' miRNA: 3'- -GUUGCCGUG------------CuGCaaGCGGCuuUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 8979 | 0.66 | 0.820188 |
Target: 5'- -cGCGGCGCGuGCGccUGCCG--GCCGc -3' miRNA: 3'- guUGCCGUGC-UGCaaGCGGCuuUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 32975 | 0.66 | 0.810752 |
Target: 5'- -cGCGGCGuCGGCG-UCGgCGGuccgcuAACCGg -3' miRNA: 3'- guUGCCGU-GCUGCaAGCgGCU------UUGGC- -5' |
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26059 | 5' | -53.2 | NC_005342.2 | + | 21676 | 0.66 | 0.810752 |
Target: 5'- uCGACGGCGCGGUGcgCGCCacauACUGc -3' miRNA: 3'- -GUUGCCGUGCUGCaaGCGGcuu-UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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