miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26059 5' -53.2 NC_005342.2 + 45226 0.66 0.791315
Target:  5'- gCGAcCGGCACGGCGgcCGCaaucucGGCCGu -3'
miRNA:   3'- -GUU-GCCGUGCUGCaaGCGgcu---UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 43261 0.66 0.791315
Target:  5'- ---gGGCGCGACGUaUC-CCGAugaguCCGg -3'
miRNA:   3'- guugCCGUGCUGCA-AGcGGCUuu---GGC- -5'
26059 5' -53.2 NC_005342.2 + 41389 0.66 0.791315
Target:  5'- gGGCGGCGCGcCGUggCGgCGAuGCgGg -3'
miRNA:   3'- gUUGCCGUGCuGCAa-GCgGCUuUGgC- -5'
26059 5' -53.2 NC_005342.2 + 45305 0.66 0.788339
Target:  5'- --cCGGCGCGACGcugcaggcugccggUgucgcCGCCGAuacGCCGg -3'
miRNA:   3'- guuGCCGUGCUGC--------------Aa----GCGGCUu--UGGC- -5'
26059 5' -53.2 NC_005342.2 + 40213 0.67 0.781336
Target:  5'- gAACGGCuCGuacuUGUUCGgCGugGCCGg -3'
miRNA:   3'- gUUGCCGuGCu---GCAAGCgGCuuUGGC- -5'
26059 5' -53.2 NC_005342.2 + 25211 0.67 0.781336
Target:  5'- aCGACGacGC-CGugGUUCGUCGAc-CCGa -3'
miRNA:   3'- -GUUGC--CGuGCugCAAGCGGCUuuGGC- -5'
26059 5' -53.2 NC_005342.2 + 47289 0.67 0.781336
Target:  5'- gCGGCGGCACGAUcg-CGCUc--ACCGa -3'
miRNA:   3'- -GUUGCCGUGCUGcaaGCGGcuuUGGC- -5'
26059 5' -53.2 NC_005342.2 + 32214 0.67 0.778311
Target:  5'- cCAGCGGCGaaauuucguugaccCGgaaGCGUUUGCCGAcgUCGc -3'
miRNA:   3'- -GUUGCCGU--------------GC---UGCAAGCGGCUuuGGC- -5'
26059 5' -53.2 NC_005342.2 + 37319 0.67 0.778311
Target:  5'- cCGGcCGGCGCGAcCGUgacgucaccuuucuUCGCCGccACCu -3'
miRNA:   3'- -GUU-GCCGUGCU-GCA--------------AGCGGCuuUGGc -5'
26059 5' -53.2 NC_005342.2 + 5027 0.67 0.771199
Target:  5'- -cACGGCACGAgGUUCGuaGucauAGCUa -3'
miRNA:   3'- guUGCCGUGCUgCAAGCggCu---UUGGc -5'
26059 5' -53.2 NC_005342.2 + 42984 0.67 0.771199
Target:  5'- aCGGgGGCGCaAgGggCGCCGAucccGGCCGg -3'
miRNA:   3'- -GUUgCCGUGcUgCaaGCGGCU----UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 44106 0.67 0.770177
Target:  5'- uCGGCGGCGCGcgcucgcuacaACGgcUUGCCGGGuucgcuuGCCGg -3'
miRNA:   3'- -GUUGCCGUGC-----------UGCa-AGCGGCUU-------UGGC- -5'
26059 5' -53.2 NC_005342.2 + 31917 0.67 0.760915
Target:  5'- aCGACGaGCGCGAUGagcacUCGCCGAGc--- -3'
miRNA:   3'- -GUUGC-CGUGCUGCa----AGCGGCUUuggc -5'
26059 5' -53.2 NC_005342.2 + 7424 0.67 0.760915
Target:  5'- aGACGGCcCGACGccgugUCGuauuCCGGGAUCGu -3'
miRNA:   3'- gUUGCCGuGCUGCa----AGC----GGCUUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 30950 0.67 0.760915
Target:  5'- gCGACGGCcgcGCGGCGcagCGCCGuc-UCGg -3'
miRNA:   3'- -GUUGCCG---UGCUGCaa-GCGGCuuuGGC- -5'
26059 5' -53.2 NC_005342.2 + 41428 0.67 0.760915
Target:  5'- gGGCGGCACGGCGcgaucaaCGagGAGAUCGg -3'
miRNA:   3'- gUUGCCGUGCUGCaa-----GCggCUUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 42416 0.67 0.750496
Target:  5'- cCGACGaGCggGCGGCGUUCGaucuGACCGa -3'
miRNA:   3'- -GUUGC-CG--UGCUGCAAGCggcuUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 8905 0.67 0.750496
Target:  5'- -uGCGGUGCGuCGUagaagcgCGCCGccGCCGa -3'
miRNA:   3'- guUGCCGUGCuGCAa------GCGGCuuUGGC- -5'
26059 5' -53.2 NC_005342.2 + 1088 0.67 0.750496
Target:  5'- gCGGCGGCGCGcCaaaugCGUCGAguAACCGu -3'
miRNA:   3'- -GUUGCCGUGCuGcaa--GCGGCU--UUGGC- -5'
26059 5' -53.2 NC_005342.2 + 10323 0.67 0.750496
Target:  5'- aCGACgcaGGCAguuUGGCG-UCGCCGAGAgCGc -3'
miRNA:   3'- -GUUG---CCGU---GCUGCaAGCGGCUUUgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.