miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26059 5' -53.2 NC_005342.2 + 33123 0.78 0.219139
Target:  5'- -uGCGGCGCGGCGacugcgCGCCG-AACCGu -3'
miRNA:   3'- guUGCCGUGCUGCaa----GCGGCuUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 27733 0.71 0.51958
Target:  5'- -cGCGGCGCGAaucugguCGgcCGCCGAGcCCGu -3'
miRNA:   3'- guUGCCGUGCU-------GCaaGCGGCUUuGGC- -5'
26059 5' -53.2 NC_005342.2 + 27384 0.71 0.542142
Target:  5'- --cCGGCGCGACGgccgUGCCGucauguuuGCCGu -3'
miRNA:   3'- guuGCCGUGCUGCaa--GCGGCuu------UGGC- -5'
26059 5' -53.2 NC_005342.2 + 22195 0.66 0.820188
Target:  5'- uCGGCGGCuGCGGCcugcucgaUGCCGAGACgGg -3'
miRNA:   3'- -GUUGCCG-UGCUGcaa-----GCGGCUUUGgC- -5'
26059 5' -53.2 NC_005342.2 + 38471 0.75 0.306909
Target:  5'- aAGCGGcCACGAgCGgcaUCGCCGAGcuuGCCGa -3'
miRNA:   3'- gUUGCC-GUGCU-GCa--AGCGGCUU---UGGC- -5'
26059 5' -53.2 NC_005342.2 + 30897 0.73 0.419175
Target:  5'- aAACGGCGCGcCGUgcucgacaaCGCCGAcauuuGCCGg -3'
miRNA:   3'- gUUGCCGUGCuGCAa--------GCGGCUu----UGGC- -5'
26059 5' -53.2 NC_005342.2 + 26032 0.73 0.42879
Target:  5'- gAACGGUAauCGACGgugCGCCGGAuuuGCCa -3'
miRNA:   3'- gUUGCCGU--GCUGCaa-GCGGCUU---UGGc -5'
26059 5' -53.2 NC_005342.2 + 2368 0.73 0.438534
Target:  5'- uGACGGCGcCGGCGgUCGCCuGGucGCCGu -3'
miRNA:   3'- gUUGCCGU-GCUGCaAGCGG-CUu-UGGC- -5'
26059 5' -53.2 NC_005342.2 + 20726 0.72 0.458396
Target:  5'- uGACGGCGCG-CGcgCuGCCGGAcaucGCCGa -3'
miRNA:   3'- gUUGCCGUGCuGCaaG-CGGCUU----UGGC- -5'
26059 5' -53.2 NC_005342.2 + 2418 0.71 0.499491
Target:  5'- -uACGGCGCGGCGaacacuugcgCGCCaaacGAAGCCGc -3'
miRNA:   3'- guUGCCGUGCUGCaa--------GCGG----CUUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 31659 0.72 0.459401
Target:  5'- aCGACGG-GCGACGcaccuuguugaacaCGCCGAAGCCGc -3'
miRNA:   3'- -GUUGCCgUGCUGCaa------------GCGGCUUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 4079 0.72 0.448404
Target:  5'- gAGCgGGCGCGACaggUCGUCGAAuuuGCCGu -3'
miRNA:   3'- gUUG-CCGUGCUGca-AGCGGCUU---UGGC- -5'
26059 5' -53.2 NC_005342.2 + 41747 0.78 0.225051
Target:  5'- cCAACGaGCGgGGCGUgcUCGCCGAAAgCGa -3'
miRNA:   3'- -GUUGC-CGUgCUGCA--AGCGGCUUUgGC- -5'
26059 5' -53.2 NC_005342.2 + 47472 0.72 0.489058
Target:  5'- --cCGGCACGuCGcgCGCCGugGCCu -3'
miRNA:   3'- guuGCCGUGCuGCaaGCGGCuuUGGc -5'
26059 5' -53.2 NC_005342.2 + 41534 0.78 0.231098
Target:  5'- cCGACGGCACGACGg-CGCCc-GGCCGc -3'
miRNA:   3'- -GUUGCCGUGCUGCaaGCGGcuUUGGC- -5'
26059 5' -53.2 NC_005342.2 + 1228 0.72 0.448404
Target:  5'- uCAACGGCAUGACGUgcuccuuggcgCGCCGccuGGCgCGc -3'
miRNA:   3'- -GUUGCCGUGCUGCAa----------GCGGCu--UUG-GC- -5'
26059 5' -53.2 NC_005342.2 + 36891 0.72 0.489058
Target:  5'- -cGCGGCgacacgccgcucACGACGcgCGCCGguGCCa -3'
miRNA:   3'- guUGCCG------------UGCUGCaaGCGGCuuUGGc -5'
26059 5' -53.2 NC_005342.2 + 6537 0.71 0.520646
Target:  5'- aUAGCGGCGCG-CGUaCGCgCGAAAgcCCGc -3'
miRNA:   3'- -GUUGCCGUGCuGCAaGCG-GCUUU--GGC- -5'
26059 5' -53.2 NC_005342.2 + 25123 0.77 0.243603
Target:  5'- aCGGCGGCGCGcACGUUCGCgGccuGCCc -3'
miRNA:   3'- -GUUGCCGUGC-UGCAAGCGgCuu-UGGc -5'
26059 5' -53.2 NC_005342.2 + 20440 0.73 0.42879
Target:  5'- uCGGCGGCGCGAagccugCGCCGGucgugacgcAGCCGg -3'
miRNA:   3'- -GUUGCCGUGCUgcaa--GCGGCU---------UUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.