miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26060 3' -54.6 NC_005342.2 + 44789 0.66 0.727456
Target:  5'- gGCCGGcUCAccGGCCUCguGCUCa-CGCAGg -3'
miRNA:   3'- -UGGCU-AGUu-UCGGAG--CGAGcaGCGUC- -5'
26060 3' -54.6 NC_005342.2 + 37876 0.66 0.727456
Target:  5'- cGCCGAUCuuGGCa-CGC-CGcUCGCAa -3'
miRNA:   3'- -UGGCUAGuuUCGgaGCGaGC-AGCGUc -5'
26060 3' -54.6 NC_005342.2 + 6411 0.66 0.727456
Target:  5'- gACCGcUCGcGGCCgggCGC-CGUCGUg- -3'
miRNA:   3'- -UGGCuAGUuUCGGa--GCGaGCAGCGuc -5'
26060 3' -54.6 NC_005342.2 + 3065 0.66 0.716633
Target:  5'- -gCGAUCuucGCCUCGUUCGacagCGCGc -3'
miRNA:   3'- ugGCUAGuuuCGGAGCGAGCa---GCGUc -5'
26060 3' -54.6 NC_005342.2 + 29708 0.66 0.716633
Target:  5'- cGCCGAaugcGAGCCccaugcgacgUCGCUCGUCGgGa -3'
miRNA:   3'- -UGGCUagu-UUCGG----------AGCGAGCAGCgUc -5'
26060 3' -54.6 NC_005342.2 + 32106 0.66 0.69474
Target:  5'- -gCGGUCAcGGCggCUCGCUCGcgggcUCGCAc -3'
miRNA:   3'- ugGCUAGUuUCG--GAGCGAGC-----AGCGUc -5'
26060 3' -54.6 NC_005342.2 + 6939 0.66 0.69474
Target:  5'- cGCCGggCGAgcucGGCCUCGUcgaaGUCGCc- -3'
miRNA:   3'- -UGGCuaGUU----UCGGAGCGag--CAGCGuc -5'
26060 3' -54.6 NC_005342.2 + 809 0.66 0.683695
Target:  5'- -gCGGUCGccugcGCgUCGCUCGgCGCGGg -3'
miRNA:   3'- ugGCUAGUuu---CGgAGCGAGCaGCGUC- -5'
26060 3' -54.6 NC_005342.2 + 20442 0.66 0.683695
Target:  5'- gGCgGcgCGAAGCCUgCGCcggUCGUgaCGCAGc -3'
miRNA:   3'- -UGgCuaGUUUCGGA-GCG---AGCA--GCGUC- -5'
26060 3' -54.6 NC_005342.2 + 3656 0.66 0.683695
Target:  5'- -aCGGUCuGAGCCgUCGCgUCGUagcUGCGGa -3'
miRNA:   3'- ugGCUAGuUUCGG-AGCG-AGCA---GCGUC- -5'
26060 3' -54.6 NC_005342.2 + 5531 0.67 0.672597
Target:  5'- gUCGGUCAGAucgaacgccGCC-CGCUCGUCGg-- -3'
miRNA:   3'- uGGCUAGUUU---------CGGaGCGAGCAGCguc -5'
26060 3' -54.6 NC_005342.2 + 2559 0.67 0.672597
Target:  5'- aGCUGAUCGcgcGCC-CGCUCGguaggugcaugCGCAGc -3'
miRNA:   3'- -UGGCUAGUuu-CGGaGCGAGCa----------GCGUC- -5'
26060 3' -54.6 NC_005342.2 + 8524 0.67 0.661461
Target:  5'- uGCCGAgcuu-GCCgaggUCGCUUGUCGuCAGu -3'
miRNA:   3'- -UGGCUaguuuCGG----AGCGAGCAGC-GUC- -5'
26060 3' -54.6 NC_005342.2 + 18165 0.67 0.661461
Target:  5'- aGCCGAUUgccggcguGCCgggugaugCGCUCGUCGUg- -3'
miRNA:   3'- -UGGCUAGuuu-----CGGa-------GCGAGCAGCGuc -5'
26060 3' -54.6 NC_005342.2 + 42016 0.67 0.650297
Target:  5'- uGCCGAcCGAGGCguaUCGCgugcUGUUGCAGc -3'
miRNA:   3'- -UGGCUaGUUUCGg--AGCGa---GCAGCGUC- -5'
26060 3' -54.6 NC_005342.2 + 40943 0.67 0.650297
Target:  5'- cGCCGGUCGugucGCCgUCGCUgCGcuuccCGCAGa -3'
miRNA:   3'- -UGGCUAGUuu--CGG-AGCGA-GCa----GCGUC- -5'
26060 3' -54.6 NC_005342.2 + 6463 0.67 0.650297
Target:  5'- gACUGcgCAcuuCCUCGCUCGU-GCAGa -3'
miRNA:   3'- -UGGCuaGUuucGGAGCGAGCAgCGUC- -5'
26060 3' -54.6 NC_005342.2 + 27642 0.67 0.650297
Target:  5'- gGCCGG-C-AAGCCUgGCaaccaCGUCGCGGc -3'
miRNA:   3'- -UGGCUaGuUUCGGAgCGa----GCAGCGUC- -5'
26060 3' -54.6 NC_005342.2 + 714 0.67 0.650297
Target:  5'- cGCCGGcCGgcGCCUCGUUCaG-CGCGGc -3'
miRNA:   3'- -UGGCUaGUuuCGGAGCGAG-CaGCGUC- -5'
26060 3' -54.6 NC_005342.2 + 15393 0.67 0.650297
Target:  5'- gACCGAcUCGAgcaGGCCgCGCUCauGUUGCAc -3'
miRNA:   3'- -UGGCU-AGUU---UCGGaGCGAG--CAGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.