miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26061 3' -57.1 NC_005342.2 + 25869 0.66 0.558838
Target:  5'- uGACGGUCGCCaaccUGgG-CGCCUcuuuccUGGCg -3'
miRNA:   3'- -UUGUCAGCGGgc--ACgUaGCGGA------ACCG- -5'
26061 3' -57.1 NC_005342.2 + 1282 0.66 0.558838
Target:  5'- uGCuuGUCGUCgGcGCGcgcCGCCUUGGCu -3'
miRNA:   3'- uUGu-CAGCGGgCaCGUa--GCGGAACCG- -5'
26061 3' -57.1 NC_005342.2 + 27533 0.66 0.558838
Target:  5'- ----aUCGCaaGUGCcgCGCCggGGCg -3'
miRNA:   3'- uugucAGCGggCACGuaGCGGaaCCG- -5'
26061 3' -57.1 NC_005342.2 + 5147 0.66 0.547967
Target:  5'- cGCAGcuugCGCCUGauugaaCAUCGCCUgcaGGCg -3'
miRNA:   3'- uUGUCa---GCGGGCac----GUAGCGGAa--CCG- -5'
26061 3' -57.1 NC_005342.2 + 5869 0.66 0.547967
Target:  5'- uGCAGUUGUCCagcaccGUGUCGCCUucgcUGGUa -3'
miRNA:   3'- uUGUCAGCGGGca----CGUAGCGGA----ACCG- -5'
26061 3' -57.1 NC_005342.2 + 38914 0.66 0.537163
Target:  5'- cGGCAGcaCGCCCGcGCAUC-CCgucGGCc -3'
miRNA:   3'- -UUGUCa-GCGGGCaCGUAGcGGaa-CCG- -5'
26061 3' -57.1 NC_005342.2 + 16098 0.67 0.494761
Target:  5'- cGACAGUCGCCgCGUuCGaCGUgcUGGCg -3'
miRNA:   3'- -UUGUCAGCGG-GCAcGUaGCGgaACCG- -5'
26061 3' -57.1 NC_005342.2 + 17431 0.67 0.494761
Target:  5'- aAAC-GUCGCCCGgg---CGCCggaugUGGCg -3'
miRNA:   3'- -UUGuCAGCGGGCacguaGCGGa----ACCG- -5'
26061 3' -57.1 NC_005342.2 + 9784 0.67 0.49268
Target:  5'- cGGCcGUCguaugccuGCCCGUccGCGUCGCCUgagcgcaugacgGGCa -3'
miRNA:   3'- -UUGuCAG--------CGGGCA--CGUAGCGGAa-----------CCG- -5'
26061 3' -57.1 NC_005342.2 + 18849 0.67 0.462976
Target:  5'- cGCAGUUG-CCGUGCGcaacgcaUUGCCgccggGGCg -3'
miRNA:   3'- uUGUCAGCgGGCACGU-------AGCGGaa---CCG- -5'
26061 3' -57.1 NC_005342.2 + 29845 0.68 0.434238
Target:  5'- --aAGaUGCCC-UGCG-CGCCUUGGCc -3'
miRNA:   3'- uugUCaGCGGGcACGUaGCGGAACCG- -5'
26061 3' -57.1 NC_005342.2 + 8498 0.68 0.42457
Target:  5'- --aAGUCGCCCGUGCcgaacagCGCgaccGGCa -3'
miRNA:   3'- uugUCAGCGGGCACGua-----GCGgaa-CCG- -5'
26061 3' -57.1 NC_005342.2 + 30439 0.68 0.42457
Target:  5'- uGGCgAGcUCGgCCGUgGCGUCGCCgaGGUa -3'
miRNA:   3'- -UUG-UC-AGCgGGCA-CGUAGCGGaaCCG- -5'
26061 3' -57.1 NC_005342.2 + 9309 0.68 0.415032
Target:  5'- -cCGGUCGCgUCGUGguUCGUCUcgugcuuguUGGCc -3'
miRNA:   3'- uuGUCAGCG-GGCACguAGCGGA---------ACCG- -5'
26061 3' -57.1 NC_005342.2 + 41684 0.68 0.405627
Target:  5'- uGACGuGUCGCCaGUGCGggcgaccgCGCCaaGGCu -3'
miRNA:   3'- -UUGU-CAGCGGgCACGUa-------GCGGaaCCG- -5'
26061 3' -57.1 NC_005342.2 + 44373 0.69 0.395438
Target:  5'- cGCAGgCGCCCGacuggGCGaauacgaUCGCCgcgaugUGGCg -3'
miRNA:   3'- uUGUCaGCGGGCa----CGU-------AGCGGa-----ACCG- -5'
26061 3' -57.1 NC_005342.2 + 157 0.7 0.335415
Target:  5'- cGCgAGUCcacuGCCCGUGCGccCGCCggcuUGGCu -3'
miRNA:   3'- uUG-UCAG----CGGGCACGUa-GCGGa---ACCG- -5'
26061 3' -57.1 NC_005342.2 + 17902 0.7 0.335415
Target:  5'- aAGCuGUcCGCCgGUGCGgccgcgCGCCU-GGCg -3'
miRNA:   3'- -UUGuCA-GCGGgCACGUa-----GCGGAaCCG- -5'
26061 3' -57.1 NC_005342.2 + 36032 0.7 0.303789
Target:  5'- -gUAGUCGCCgggCGUcGCAUCGCCUacGGUu -3'
miRNA:   3'- uuGUCAGCGG---GCA-CGUAGCGGAa-CCG- -5'
26061 3' -57.1 NC_005342.2 + 41906 0.71 0.267546
Target:  5'- gGACGGacuUCGCCCGU--AUCGCCUgcGGCu -3'
miRNA:   3'- -UUGUC---AGCGGGCAcgUAGCGGAa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.