miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26061 5' -51.4 NC_005342.2 + 25881 0.66 0.891371
Target:  5'- gUGCgCGAGCGccaaGCGccGCGCUUCGc -3'
miRNA:   3'- gACGaGCUCGCua--UGCu-UGCGAAGCu -5'
26061 5' -51.4 NC_005342.2 + 1468 0.66 0.88378
Target:  5'- gUGC-CGAgcaGCGcgGCGGACaCUUCGAc -3'
miRNA:   3'- gACGaGCU---CGCuaUGCUUGcGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 20973 0.66 0.875913
Target:  5'- -cGCggcgCGGGCGAgUGgGuGCGUUUCGAg -3'
miRNA:   3'- gaCGa---GCUCGCU-AUgCuUGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 5005 0.66 0.875913
Target:  5'- aUGCggcgCGGGC-AUGCGAACGCacggcaCGAg -3'
miRNA:   3'- gACGa---GCUCGcUAUGCUUGCGaa----GCU- -5'
26061 5' -51.4 NC_005342.2 + 15647 0.66 0.859382
Target:  5'- -aGCUucaCGAGCaucGCGAACGCUUUGu -3'
miRNA:   3'- gaCGA---GCUCGcuaUGCUUGCGAAGCu -5'
26061 5' -51.4 NC_005342.2 + 37577 0.67 0.850733
Target:  5'- -gGaCUCGAGCccGAggccgGUGAGCGCUUCGGc -3'
miRNA:   3'- gaC-GAGCUCG--CUa----UGCUUGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 25072 0.67 0.850733
Target:  5'- uCUGCUcgucaCGAGCGccaGUACGAuCGCgcCGAu -3'
miRNA:   3'- -GACGA-----GCUCGC---UAUGCUuGCGaaGCU- -5'
26061 5' -51.4 NC_005342.2 + 46629 0.67 0.841839
Target:  5'- aUGCUgcAGCGccGCGAGCGCcgCGAa -3'
miRNA:   3'- gACGAgcUCGCuaUGCUUGCGaaGCU- -5'
26061 5' -51.4 NC_005342.2 + 23816 0.67 0.840936
Target:  5'- gCUGCUCGugaaGGCGGccGCGAacauugcGCGCUgCGAc -3'
miRNA:   3'- -GACGAGC----UCGCUa-UGCU-------UGCGAaGCU- -5'
26061 5' -51.4 NC_005342.2 + 29547 0.67 0.83271
Target:  5'- -cGC-CGAucGCGAgGCGuuGCGCUUCGGa -3'
miRNA:   3'- gaCGaGCU--CGCUaUGCu-UGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 10762 0.67 0.822409
Target:  5'- uUGCUCGAucugcauGCGuuugGCGAGCGCcggaaugUCGGc -3'
miRNA:   3'- gACGAGCU-------CGCua--UGCUUGCGa------AGCU- -5'
26061 5' -51.4 NC_005342.2 + 661 0.67 0.822409
Target:  5'- gUGCUCGGugagcGCGAUcgugccgccgcccGCGAGCGCcguggCGAg -3'
miRNA:   3'- gACGAGCU-----CGCUA-------------UGCUUGCGaa---GCU- -5'
26061 5' -51.4 NC_005342.2 + 39643 0.67 0.813787
Target:  5'- aUGCuUUGGGCGAaGCGAuggagcaaGCGCU-CGAa -3'
miRNA:   3'- gACG-AGCUCGCUaUGCU--------UGCGAaGCU- -5'
26061 5' -51.4 NC_005342.2 + 27464 0.68 0.773594
Target:  5'- -gGCUCGAGCGuGUGCuGAACGaccgccgCGAu -3'
miRNA:   3'- gaCGAGCUCGC-UAUG-CUUGCgaa----GCU- -5'
26061 5' -51.4 NC_005342.2 + 19228 0.68 0.773594
Target:  5'- -cGCUCGAGCaAUACGGgcuggACGUgaCGAa -3'
miRNA:   3'- gaCGAGCUCGcUAUGCU-----UGCGaaGCU- -5'
26061 5' -51.4 NC_005342.2 + 19603 0.68 0.767331
Target:  5'- -cGCgaacaaggucacggCGAGCGcgGCGAGCGCggcCGAc -3'
miRNA:   3'- gaCGa-------------GCUCGCuaUGCUUGCGaa-GCU- -5'
26061 5' -51.4 NC_005342.2 + 43142 0.68 0.763126
Target:  5'- -cGCUCGGGuCGGgcugACGGACGCgcgcaUCGc -3'
miRNA:   3'- gaCGAGCUC-GCUa---UGCUUGCGa----AGCu -5'
26061 5' -51.4 NC_005342.2 + 35601 0.69 0.752514
Target:  5'- -cGC-CGGGCGGggcgcggGCGGGCGCUaCGGc -3'
miRNA:   3'- gaCGaGCUCGCUa------UGCUUGCGAaGCU- -5'
26061 5' -51.4 NC_005342.2 + 22544 0.69 0.752514
Target:  5'- uUGC-CGAGCGA--CGAGCGCgcggUGAa -3'
miRNA:   3'- gACGaGCUCGCUauGCUUGCGaa--GCU- -5'
26061 5' -51.4 NC_005342.2 + 29989 0.69 0.752514
Target:  5'- aUGaUCGAGUGGUGCGucagaAugGCUUCGu -3'
miRNA:   3'- gACgAGCUCGCUAUGC-----UugCGAAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.