miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26061 5' -51.4 NC_005342.2 + 31156 1.09 0.002186
Target:  5'- gCUGCUCGAGCGAUACGAACGCUUCGAc -3'
miRNA:   3'- -GACGAGCUCGCUAUGCUUGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 28740 0.79 0.219202
Target:  5'- uUGCUCGAGCGccGUGCGgAACGCcgCGAg -3'
miRNA:   3'- gACGAGCUCGC--UAUGC-UUGCGaaGCU- -5'
26061 5' -51.4 NC_005342.2 + 32180 0.78 0.250824
Target:  5'- -gGCgUCGGcGCGAU-CGAACGCUUCGAg -3'
miRNA:   3'- gaCG-AGCU-CGCUAuGCUUGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 41324 0.78 0.264491
Target:  5'- cCUGCUCGAGCGcgcCGAGCGCgcugcCGAg -3'
miRNA:   3'- -GACGAGCUCGCuauGCUUGCGaa---GCU- -5'
26061 5' -51.4 NC_005342.2 + 10248 0.75 0.395685
Target:  5'- -aGC-CGAGCGAcGCGGGCaguGCUUCGAg -3'
miRNA:   3'- gaCGaGCUCGCUaUGCUUG---CGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 19378 0.75 0.405162
Target:  5'- -cGCUCGAGCGugcagguUACGAACGCagcCGGc -3'
miRNA:   3'- gaCGAGCUCGCu------AUGCUUGCGaa-GCU- -5'
26061 5' -51.4 NC_005342.2 + 30841 0.75 0.414781
Target:  5'- gCUGCUCGcgcGCGAgcccgGCGAACGCgUCGc -3'
miRNA:   3'- -GACGAGCu--CGCUa----UGCUUGCGaAGCu -5'
26061 5' -51.4 NC_005342.2 + 2450 0.74 0.424539
Target:  5'- uUGUUCGAcagaaucuuGCGAU-CGAGCGUUUCGAc -3'
miRNA:   3'- gACGAGCU---------CGCUAuGCUUGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 11109 0.73 0.496427
Target:  5'- -cGCgUCGuGCGGcgUGAGCGCUUCGAg -3'
miRNA:   3'- gaCG-AGCuCGCUauGCUUGCGAAGCU- -5'
26061 5' -51.4 NC_005342.2 + 19914 0.72 0.573309
Target:  5'- gUGCUcacgccgaucaCGAGCGAUACGAucaGCaUCGAc -3'
miRNA:   3'- gACGA-----------GCUCGCUAUGCUug-CGaAGCU- -5'
26061 5' -51.4 NC_005342.2 + 28601 0.71 0.584563
Target:  5'- aCUGCUCGAGCGcgAUGucGACGaagUUGAa -3'
miRNA:   3'- -GACGAGCUCGCuaUGC--UUGCga-AGCU- -5'
26061 5' -51.4 NC_005342.2 + 38066 0.71 0.641273
Target:  5'- cCUGCUCGuGUGggACGGucACGCgaUCGAc -3'
miRNA:   3'- -GACGAGCuCGCuaUGCU--UGCGa-AGCU- -5'
26061 5' -51.4 NC_005342.2 + 20037 0.7 0.686539
Target:  5'- -cGCUUGugauCGAgGCGAACGCUUCGu -3'
miRNA:   3'- gaCGAGCuc--GCUaUGCUUGCGAAGCu -5'
26061 5' -51.4 NC_005342.2 + 37512 0.7 0.697746
Target:  5'- aUGCgaagCGGcGCGAUGCGAaGCGCgucgCGAu -3'
miRNA:   3'- gACGa---GCU-CGCUAUGCU-UGCGaa--GCU- -5'
26061 5' -51.4 NC_005342.2 + 500 0.7 0.697746
Target:  5'- gUGCcggCGAGCG---UGAACGCUUCGu -3'
miRNA:   3'- gACGa--GCUCGCuauGCUUGCGAAGCu -5'
26061 5' -51.4 NC_005342.2 + 2766 0.69 0.708885
Target:  5'- cCUGCUCGGGCGGcagGUGGACGCcguagUUGGc -3'
miRNA:   3'- -GACGAGCUCGCUa--UGCUUGCGa----AGCU- -5'
26061 5' -51.4 NC_005342.2 + 2670 0.69 0.719945
Target:  5'- gCUGgUCGAGCGccAUGAGCGC--CGAg -3'
miRNA:   3'- -GACgAGCUCGCuaUGCUUGCGaaGCU- -5'
26061 5' -51.4 NC_005342.2 + 17402 0.69 0.752514
Target:  5'- -cGCUCGAcGCGuucUACGA-CGCggugUCGAc -3'
miRNA:   3'- gaCGAGCU-CGCu--AUGCUuGCGa---AGCU- -5'
26061 5' -51.4 NC_005342.2 + 29989 0.69 0.752514
Target:  5'- aUGaUCGAGUGGUGCGucagaAugGCUUCGu -3'
miRNA:   3'- gACgAGCUCGCUAUGC-----UugCGAAGCu -5'
26061 5' -51.4 NC_005342.2 + 35601 0.69 0.752514
Target:  5'- -cGC-CGGGCGGggcgcggGCGGGCGCUaCGGc -3'
miRNA:   3'- gaCGaGCUCGCUa------UGCUUGCGAaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.