miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26062 5' -54 NC_005342.2 + 15702 0.66 0.774693
Target:  5'- cGCCGuGC-UUCACGUCGAAGccuuccacguaGCGAc- -3'
miRNA:   3'- cCGGC-CGcAAGUGCAGCUUC-----------CGUUag -5'
26062 5' -54 NC_005342.2 + 2530 0.66 0.774693
Target:  5'- aGGCC-GCGaaCGCGagaCGAucGGCAAUCa -3'
miRNA:   3'- -CCGGcCGCaaGUGCa--GCUu-CCGUUAG- -5'
26062 5' -54 NC_005342.2 + 7654 0.66 0.774693
Target:  5'- uGCCGGCGaaCccgaccaugGCGUCGuagcGGUGAUCg -3'
miRNA:   3'- cCGGCCGCaaG---------UGCAGCuu--CCGUUAG- -5'
26062 5' -54 NC_005342.2 + 27641 0.66 0.768552
Target:  5'- cGGCCGGCaagccuggcaacCACGUCGc-GGCGAg- -3'
miRNA:   3'- -CCGGCCGcaa---------GUGCAGCuuCCGUUag -5'
26062 5' -54 NC_005342.2 + 37110 0.66 0.764429
Target:  5'- cGCCGGCGUUCuucccgcgcgGCGUC-AAGcGCGu-- -3'
miRNA:   3'- cCGGCCGCAAG----------UGCAGcUUC-CGUuag -5'
26062 5' -54 NC_005342.2 + 41846 0.66 0.749827
Target:  5'- uGCCGGUGcacgacaugacgcUCACGccCGAGGGCAAc- -3'
miRNA:   3'- cCGGCCGCa------------AGUGCa-GCUUCCGUUag -5'
26062 5' -54 NC_005342.2 + 38975 0.66 0.732845
Target:  5'- cGGCCGGCaGgcgCACG-CGcgcGCGAUCg -3'
miRNA:   3'- -CCGGCCG-Caa-GUGCaGCuucCGUUAG- -5'
26062 5' -54 NC_005342.2 + 14354 0.66 0.731774
Target:  5'- aGGUCGGCGaUCGCcugcgcgGUCgccauGAAGGCGAg- -3'
miRNA:   3'- -CCGGCCGCaAGUG-------CAG-----CUUCCGUUag -5'
26062 5' -54 NC_005342.2 + 44387 0.67 0.722093
Target:  5'- cGGCauuGGUGUcgACGUCGAggccgcccAGGCGAUg -3'
miRNA:   3'- -CCGg--CCGCAagUGCAGCU--------UCCGUUAg -5'
26062 5' -54 NC_005342.2 + 18972 0.67 0.711249
Target:  5'- cGGCCcGCGc-CGCGUaGggGGCAcGUCa -3'
miRNA:   3'- -CCGGcCGCaaGUGCAgCuuCCGU-UAG- -5'
26062 5' -54 NC_005342.2 + 32662 0.67 0.711249
Target:  5'- aGGuaGGCGUgCGCGUCG--GGCAGc- -3'
miRNA:   3'- -CCggCCGCAaGUGCAGCuuCCGUUag -5'
26062 5' -54 NC_005342.2 + 22246 0.67 0.70907
Target:  5'- uGGCCGGCGagcaagccauucUCGCGggCGuucAGGCGgAUCa -3'
miRNA:   3'- -CCGGCCGCa-----------AGUGCa-GCu--UCCGU-UAG- -5'
26062 5' -54 NC_005342.2 + 16527 0.67 0.700325
Target:  5'- -cCCGGCGUccgUCACGcugUCGaAAGGCAu-- -3'
miRNA:   3'- ccGGCCGCA---AGUGC---AGC-UUCCGUuag -5'
26062 5' -54 NC_005342.2 + 47272 0.67 0.700325
Target:  5'- cGCCacGGCGcUCGCGggCGgcGGCAcgAUCg -3'
miRNA:   3'- cCGG--CCGCaAGUGCa-GCuuCCGU--UAG- -5'
26062 5' -54 NC_005342.2 + 43245 0.67 0.68823
Target:  5'- aGGCCGGCGUgcUCGCGggcgCGAcguAucccgaugaguccGGCAAg- -3'
miRNA:   3'- -CCGGCCGCA--AGUGCa---GCU---U-------------CCGUUag -5'
26062 5' -54 NC_005342.2 + 17298 0.67 0.686024
Target:  5'- cGCCGGCGUaucgccggacgugaUCguuGCGaUGAAGGCGAg- -3'
miRNA:   3'- cCGGCCGCA--------------AG---UGCaGCUUCCGUUag -5'
26062 5' -54 NC_005342.2 + 11409 0.67 0.678284
Target:  5'- cGGCCGGCGauggccguagCGCGcacUCGAcGGCAu-- -3'
miRNA:   3'- -CCGGCCGCaa--------GUGC---AGCUuCCGUuag -5'
26062 5' -54 NC_005342.2 + 16119 0.67 0.667191
Target:  5'- uGCUGGCGcuuaUCGCGUCGGAacuGCcGUCa -3'
miRNA:   3'- cCGGCCGCa---AGUGCAGCUUc--CGuUAG- -5'
26062 5' -54 NC_005342.2 + 45344 0.67 0.667191
Target:  5'- cGCCGGCGagCGCGaUGAAccGcGCGGUCg -3'
miRNA:   3'- cCGGCCGCaaGUGCaGCUU--C-CGUUAG- -5'
26062 5' -54 NC_005342.2 + 717 0.68 0.656063
Target:  5'- cGGCCGGCGccu-CGUUcagcgcGGCAGUCg -3'
miRNA:   3'- -CCGGCCGCaaguGCAGcuu---CCGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.