miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26063 3' -53.9 NC_005342.2 + 10568 0.66 0.768069
Target:  5'- -gGCCGGCcgacgagcGGGUcGGGCG-CGCGCUc -3'
miRNA:   3'- uaCGGCCGc-------UCCAaUUUGCuGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 33159 0.66 0.768069
Target:  5'- -aGuCCGGCagcauuGGc--AGCGGCGCGCCg -3'
miRNA:   3'- uaC-GGCCGcu----CCaauUUGCUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 47716 0.66 0.765994
Target:  5'- cGUGCuCGGCGGcGUgacgaccacaucGAACGGCACGgCg -3'
miRNA:   3'- -UACG-GCCGCUcCAa-----------UUUGCUGUGCgG- -5'
26063 3' -53.9 NC_005342.2 + 19226 0.66 0.763914
Target:  5'- cGUGCUGGCcgcacgcGACGcACACGCCg -3'
miRNA:   3'- -UACGGCCGcuccaauUUGC-UGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 9854 0.66 0.757638
Target:  5'- -gGCCGGCGucacgccGGcgcaccCGACACGCg -3'
miRNA:   3'- uaCGGCCGCu------CCaauuu-GCUGUGCGg -5'
26063 3' -53.9 NC_005342.2 + 33117 0.66 0.757638
Target:  5'- gAUGCCugcGGCGcGGc--GACuGCGCGCCg -3'
miRNA:   3'- -UACGG---CCGCuCCaauUUGcUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 15472 0.66 0.757638
Target:  5'- cUGCUcGCGGcGGUcaccGGCGGCGCGUCa -3'
miRNA:   3'- uACGGcCGCU-CCAau--UUGCUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 9013 0.66 0.757638
Target:  5'- cUGCCuuuGGCGAccu---GCGACACGUCg -3'
miRNA:   3'- uACGG---CCGCUccaauuUGCUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 35601 0.66 0.757638
Target:  5'- -cGCCgGGCGGGGcgcGGGCGG-GCGCUa -3'
miRNA:   3'- uaCGG-CCGCUCCaa-UUUGCUgUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 38509 0.66 0.757638
Target:  5'- -aGCuCGGCGGcGGU---GCGGCGC-CCg -3'
miRNA:   3'- uaCG-GCCGCU-CCAauuUGCUGUGcGG- -5'
26063 3' -53.9 NC_005342.2 + 38597 0.66 0.754482
Target:  5'- gAUGCCGGgcgccgaggacaaCGAGGaagaaggcccGACGccGCGCGCCg -3'
miRNA:   3'- -UACGGCC-------------GCUCCaau-------UUGC--UGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 748 0.66 0.747073
Target:  5'- -cGCCGGCGc-GUUGcuaguCGAUGCGUCg -3'
miRNA:   3'- uaCGGCCGCucCAAUuu---GCUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 25310 0.66 0.747073
Target:  5'- -cGCCGGCGAcGGcc--GCGACguACGUa -3'
miRNA:   3'- uaCGGCCGCU-CCaauuUGCUG--UGCGg -5'
26063 3' -53.9 NC_005342.2 + 47834 0.66 0.747073
Target:  5'- gGUGCCGaCGAGGcgcAGGCGGCAa-CCg -3'
miRNA:   3'- -UACGGCcGCUCCaa-UUUGCUGUgcGG- -5'
26063 3' -53.9 NC_005342.2 + 43385 0.66 0.740675
Target:  5'- cUGCCGGCGcGGccguucauggaaaAGACGAUugccgaccgcaGCGCCg -3'
miRNA:   3'- uACGGCCGCuCCaa-----------UUUGCUG-----------UGCGG- -5'
26063 3' -53.9 NC_005342.2 + 7533 0.66 0.73746
Target:  5'- -cGCCGGUGAcgaucgcggcgaucgGGUUGGuguucuuugcggucGCGAgUGCGCCg -3'
miRNA:   3'- uaCGGCCGCU---------------CCAAUU--------------UGCU-GUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 19787 0.66 0.736386
Target:  5'- cGUGCCGcGCGuuGagu-GCGAUGCGCUg -3'
miRNA:   3'- -UACGGC-CGCucCaauuUGCUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 11262 0.66 0.736386
Target:  5'- uUGCCGcGCGcuGUUGAACu--GCGCCg -3'
miRNA:   3'- uACGGC-CGCucCAAUUUGcugUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 14882 0.66 0.736386
Target:  5'- -aGCaGGCGuuccacGACGGCGCGCCg -3'
miRNA:   3'- uaCGgCCGCuccaauUUGCUGUGCGG- -5'
26063 3' -53.9 NC_005342.2 + 8227 0.66 0.736386
Target:  5'- -cGCCGcGCGAGuuccgUGAucaguccuACGAaCGCGCCa -3'
miRNA:   3'- uaCGGC-CGCUCca---AUU--------UGCU-GUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.