miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26065 3' -55.9 NC_005342.2 + 44251 0.66 0.686499
Target:  5'- aUUGAU--CCGCC-CGggGGUGCGcgaGGCg -3'
miRNA:   3'- -AGCUAgcGGCGGuGCuuUCGCGC---UCG- -5'
26065 3' -55.9 NC_005342.2 + 39318 0.66 0.686499
Target:  5'- cCGAcggCaCCGUCACGAgcAAGC-CGGGCg -3'
miRNA:   3'- aGCUa--GcGGCGGUGCU--UUCGcGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 34178 0.66 0.686499
Target:  5'- gCGccUCGCgCGCCAguuCGAAguGGaCGUGAGCa -3'
miRNA:   3'- aGCu-AGCG-GCGGU---GCUU--UC-GCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 3277 0.66 0.686499
Target:  5'- --aGUCgGCCGCCgACGu--GCGCGcGCa -3'
miRNA:   3'- agcUAG-CGGCGG-UGCuuuCGCGCuCG- -5'
26065 3' -55.9 NC_005342.2 + 43807 0.66 0.686499
Target:  5'- ----aCGCCGCUGCagcacGAGCGCGGcGCg -3'
miRNA:   3'- agcuaGCGGCGGUGcu---UUCGCGCU-CG- -5'
26065 3' -55.9 NC_005342.2 + 25426 0.66 0.686499
Target:  5'- gCGGUaGCCGUCACGccuGGCGUGccGGUc -3'
miRNA:   3'- aGCUAgCGGCGGUGCuu-UCGCGC--UCG- -5'
26065 3' -55.9 NC_005342.2 + 38870 0.66 0.685412
Target:  5'- cCGAUCucgacgacauccuGCCGCC-CGugcuGCGCGcGCu -3'
miRNA:   3'- aGCUAG-------------CGGCGGuGCuuu-CGCGCuCG- -5'
26065 3' -55.9 NC_005342.2 + 7541 0.66 0.683237
Target:  5'- aCGAUCGCgGCgAuCGGGuugguguucuuugcGGuCGCGAGUg -3'
miRNA:   3'- aGCUAGCGgCGgU-GCUU--------------UC-GCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 44141 0.66 0.675609
Target:  5'- uUCGcUUGCCGgCGCGugcGAGGCGCuuGGCc -3'
miRNA:   3'- -AGCuAGCGGCgGUGC---UUUCGCGc-UCG- -5'
26065 3' -55.9 NC_005342.2 + 47362 0.66 0.675609
Target:  5'- gCGcGUCGCCGagaugggcggCACGuucgauccGCGCGAGCa -3'
miRNA:   3'- aGC-UAGCGGCg---------GUGCuuu-----CGCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 28771 0.66 0.675609
Target:  5'- ----gCGCCGcCCACGAucGCGCcgaccuGGCg -3'
miRNA:   3'- agcuaGCGGC-GGUGCUuuCGCGc-----UCG- -5'
26065 3' -55.9 NC_005342.2 + 7432 0.66 0.675609
Target:  5'- cUUGAUCaGCU-CCAuCGAcGGgGCGAGCg -3'
miRNA:   3'- -AGCUAG-CGGcGGU-GCUuUCgCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 41660 0.66 0.675609
Target:  5'- gCGGUCGUCcUCACGGcuGCGC-AGCc -3'
miRNA:   3'- aGCUAGCGGcGGUGCUuuCGCGcUCG- -5'
26065 3' -55.9 NC_005342.2 + 29054 0.66 0.675609
Target:  5'- cUCGAUCGCCacaaacaggcgGCCuuCGAu-GCGUucuGGGCg -3'
miRNA:   3'- -AGCUAGCGG-----------CGGu-GCUuuCGCG---CUCG- -5'
26065 3' -55.9 NC_005342.2 + 30328 0.66 0.675609
Target:  5'- gCGAacgUGUCgGCCACGGcaccGGGCGCGgccGGCg -3'
miRNA:   3'- aGCUa--GCGG-CGGUGCU----UUCGCGC---UCG- -5'
26065 3' -55.9 NC_005342.2 + 39797 0.66 0.675609
Target:  5'- cUCGA-CGCCGCUcaccgaguacGCGAuGGaCGCG-GCc -3'
miRNA:   3'- -AGCUaGCGGCGG----------UGCUuUC-GCGCuCG- -5'
26065 3' -55.9 NC_005342.2 + 43341 0.66 0.675609
Target:  5'- ----cCGUCGCCAUGAucGCGauGGCg -3'
miRNA:   3'- agcuaGCGGCGGUGCUuuCGCgcUCG- -5'
26065 3' -55.9 NC_005342.2 + 19272 0.66 0.675609
Target:  5'- cUGAUUGCCGCguuCGAccGCGUGAacaacGCg -3'
miRNA:   3'- aGCUAGCGGCGgu-GCUuuCGCGCU-----CG- -5'
26065 3' -55.9 NC_005342.2 + 8921 0.66 0.674518
Target:  5'- -aGcgCGCCGCCGcCGAGcgaaucggcugccAGCcccggGUGAGCa -3'
miRNA:   3'- agCuaGCGGCGGU-GCUU-------------UCG-----CGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 2387 0.66 0.672334
Target:  5'- cUGGUCGCCGUacaGCGGcAacgugccuugguacGGCGCG-GCg -3'
miRNA:   3'- aGCUAGCGGCGg--UGCU-U--------------UCGCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.