miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26065 3' -55.9 NC_005342.2 + 116 0.7 0.422805
Target:  5'- cCGGUUGCCGCCugcgccuCGucGGCacCGAGCa -3'
miRNA:   3'- aGCUAGCGGCGGu------GCuuUCGc-GCUCG- -5'
26065 3' -55.9 NC_005342.2 + 142 0.74 0.260914
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 674 0.73 0.281575
Target:  5'- gCGAUCguGCCGCCGCc----CGCGAGCg -3'
miRNA:   3'- aGCUAG--CGGCGGUGcuuucGCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 809 0.71 0.385941
Target:  5'- gCGGUCGCCuGCgCGuCGcucGGCGCGGGUg -3'
miRNA:   3'- aGCUAGCGG-CG-GU-GCuu-UCGCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 1075 0.69 0.481847
Target:  5'- aUCGG-CGCaCGCUGCGgcGGCGCGccaaauGCg -3'
miRNA:   3'- -AGCUaGCG-GCGGUGCuuUCGCGCu-----CG- -5'
26065 3' -55.9 NC_005342.2 + 1122 0.74 0.247837
Target:  5'- cCGAUCGucaCCGCUgaGCGGcagcauuucGAGCGCGAGUa -3'
miRNA:   3'- aGCUAGC---GGCGG--UGCU---------UUCGCGCUCG- -5'
26065 3' -55.9 NC_005342.2 + 1250 0.69 0.451799
Target:  5'- -gGcgCGCCGCCugGc--GCGCGuuGCg -3'
miRNA:   3'- agCuaGCGGCGGugCuuuCGCGCu-CG- -5'
26065 3' -55.9 NC_005342.2 + 1294 0.7 0.404107
Target:  5'- gCGcgCGCCGCCuuGGcugcGCGCGAuGCu -3'
miRNA:   3'- aGCuaGCGGCGGugCUuu--CGCGCU-CG- -5'
26065 3' -55.9 NC_005342.2 + 2025 0.66 0.664678
Target:  5'- uUCGAgCGCCuGgCGCuGAuccGGCGCGAGa -3'
miRNA:   3'- -AGCUaGCGG-CgGUG-CUu--UCGCGCUCg -5'
26065 3' -55.9 NC_005342.2 + 2387 0.66 0.672334
Target:  5'- cUGGUCGCCGUacaGCGGcAacgugccuugguacGGCGCG-GCg -3'
miRNA:   3'- aGCUAGCGGCGg--UGCU-U--------------UCGCGCuCG- -5'
26065 3' -55.9 NC_005342.2 + 2469 0.77 0.166337
Target:  5'- aUCGA-CGCCGCCuCGAGgucgGGCGCGAcGUa -3'
miRNA:   3'- -AGCUaGCGGCGGuGCUU----UCGCGCU-CG- -5'
26065 3' -55.9 NC_005342.2 + 2671 0.68 0.533934
Target:  5'- cUGGUCGagCGCCAUGA--GCGcCGAGUa -3'
miRNA:   3'- aGCUAGCg-GCGGUGCUuuCGC-GCUCG- -5'
26065 3' -55.9 NC_005342.2 + 2745 0.67 0.609775
Target:  5'- cCGGUCGCguuCGUCACGAccgugAAGCgauuGCGcAGCg -3'
miRNA:   3'- aGCUAGCG---GCGGUGCU-----UUCG----CGC-UCG- -5'
26065 3' -55.9 NC_005342.2 + 3123 0.75 0.217514
Target:  5'- gCGAUCGCCGCgCA-GAcAGGCGuCGAGUa -3'
miRNA:   3'- aGCUAGCGGCG-GUgCU-UUCGC-GCUCG- -5'
26065 3' -55.9 NC_005342.2 + 3207 0.67 0.598814
Target:  5'- cUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3'
miRNA:   3'- aGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5'
26065 3' -55.9 NC_005342.2 + 3277 0.66 0.686499
Target:  5'- --aGUCgGCCGCCgACGu--GCGCGcGCa -3'
miRNA:   3'- agcUAG-CGGCGG-UGCuuuCGCGCuCG- -5'
26065 3' -55.9 NC_005342.2 + 3358 0.69 0.492078
Target:  5'- gUCGAccggCGUCGCCGuCGuc-GCGgGAGCu -3'
miRNA:   3'- -AGCUa---GCGGCGGU-GCuuuCGCgCUCG- -5'
26065 3' -55.9 NC_005342.2 + 3410 0.72 0.326742
Target:  5'- gCGGUCGCCaCCugGuugaccuGCGCGuGCa -3'
miRNA:   3'- aGCUAGCGGcGGugCuuu----CGCGCuCG- -5'
26065 3' -55.9 NC_005342.2 + 4063 0.68 0.512831
Target:  5'- --aGUCGCCGCCcuugcCGAGcgGGCGCGAc- -3'
miRNA:   3'- agcUAGCGGCGGu----GCUU--UCGCGCUcg -5'
26065 3' -55.9 NC_005342.2 + 4609 0.68 0.523342
Target:  5'- aUUGAgCGCCaUCGCGAucauGGCGaCGGGCa -3'
miRNA:   3'- -AGCUaGCGGcGGUGCUu---UCGC-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.