Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26065 | 5' | -55.3 | NC_005342.2 | + | 9606 | 0.66 | 0.623015 |
|
Target: 5'- -gGCUGCCGgCggCgcgccUGCGCCCg -3' miRNA: 3'- aaUGACGGCgGaaGaacacACGCGGG- -5' |
|||||||
| 26065 | 5' | -55.3 | NC_005342.2 | + | 43012 | 0.67 | 0.566834 |
|
Target: 5'- -cGCUGCCGCaaggCUcGgccauUGCGCCCu -3' miRNA: 3'- aaUGACGGCGgaa-GAaCac---ACGCGGG- -5' |
|||||||
| 26065 | 5' | -55.3 | NC_005342.2 | + | 18869 | 0.67 | 0.566834 |
|
Target: 5'- -cAUUGCCGCCg----Gg--GCGCCCa -3' miRNA: 3'- aaUGACGGCGGaagaaCacaCGCGGG- -5' |
|||||||
| 26065 | 5' | -55.3 | NC_005342.2 | + | 35129 | 0.67 | 0.555729 |
|
Target: 5'- aUugUGCCGCCUgugaUgUUGgcGUGCGCa- -3' miRNA: 3'- aAugACGGCGGA----AgAACa-CACGCGgg -5' |
|||||||
| 26065 | 5' | -55.3 | NC_005342.2 | + | 28707 | 0.71 | 0.329834 |
|
Target: 5'- cUGCgcgGCCGCCggaUCggcGUGUGCGUCg -3' miRNA: 3'- aAUGa--CGGCGGa--AGaa-CACACGCGGg -5' |
|||||||
| 26065 | 5' | -55.3 | NC_005342.2 | + | 27775 | 1.1 | 0.000525 |
|
Target: 5'- aUUACUGCCGCCUUCUUGUGUGCGCCCg -3' miRNA: 3'- -AAUGACGGCGGAAGAACACACGCGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home