miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26066 3' -60.9 NC_005342.2 + 17284 0.66 0.451342
Target:  5'- uCGCGCcugacGGCCGC--CGGCGuaucgCCGGa -3'
miRNA:   3'- -GCGCG-----UCGGCGcaGCCGCuaca-GGCC- -5'
26066 3' -60.9 NC_005342.2 + 29727 0.66 0.441948
Target:  5'- gCGUGCcGUCgGCGUCGuaGAUuUCCGGc -3'
miRNA:   3'- -GCGCGuCGG-CGCAGCcgCUAcAGGCC- -5'
26066 3' -60.9 NC_005342.2 + 47167 0.66 0.441948
Target:  5'- aGUGCAGCUguucgguccuGCGcCGGCGA---CCGGc -3'
miRNA:   3'- gCGCGUCGG----------CGCaGCCGCUacaGGCC- -5'
26066 3' -60.9 NC_005342.2 + 36238 0.66 0.441948
Target:  5'- aCGuCGguGCCG-GUCGGC--UG-CCGGa -3'
miRNA:   3'- -GC-GCguCGGCgCAGCCGcuACaGGCC- -5'
26066 3' -60.9 NC_005342.2 + 2620 0.66 0.441948
Target:  5'- uCGCGCucGCCgGCGuaUCGGCGgcGacaCCGGc -3'
miRNA:   3'- -GCGCGu-CGG-CGC--AGCCGCuaCa--GGCC- -5'
26066 3' -60.9 NC_005342.2 + 29157 0.66 0.441015
Target:  5'- aCGCGCccugcGGCCGCGcgauaagcgcgguUCaGCGAUGg-CGGg -3'
miRNA:   3'- -GCGCG-----UCGGCGC-------------AGcCGCUACagGCC- -5'
26066 3' -60.9 NC_005342.2 + 13100 0.66 0.432666
Target:  5'- uCGCG-AGCUGCGUCauGCuGAUG-CCGGc -3'
miRNA:   3'- -GCGCgUCGGCGCAGc-CG-CUACaGGCC- -5'
26066 3' -60.9 NC_005342.2 + 29585 0.66 0.432666
Target:  5'- gCGCGCGGuaGuCGUCGGCGAagcgcUGcgcgaUCGGg -3'
miRNA:   3'- -GCGCGUCggC-GCAGCCGCU-----ACa----GGCC- -5'
26066 3' -60.9 NC_005342.2 + 33126 0.66 0.432666
Target:  5'- gGCGCGGCgacugCGCGcCGaaccguagccGCGA-GUCCGGc -3'
miRNA:   3'- gCGCGUCG-----GCGCaGC----------CGCUaCAGGCC- -5'
26066 3' -60.9 NC_005342.2 + 33585 0.66 0.432666
Target:  5'- uGCuGCAGCCGaGUCGGCcagcgacaGcgGUgCGGu -3'
miRNA:   3'- gCG-CGUCGGCgCAGCCG--------CuaCAgGCC- -5'
26066 3' -60.9 NC_005342.2 + 38825 0.66 0.432666
Target:  5'- gCGCGCAGCUGCGgUCGagcaggcaaagcGCGAcGUgCGu -3'
miRNA:   3'- -GCGCGUCGGCGC-AGC------------CGCUaCAgGCc -5'
26066 3' -60.9 NC_005342.2 + 17667 0.66 0.432666
Target:  5'- --aGCGGUCGaUGUC-GCGGUGUUCGGc -3'
miRNA:   3'- gcgCGUCGGC-GCAGcCGCUACAGGCC- -5'
26066 3' -60.9 NC_005342.2 + 46661 0.66 0.432666
Target:  5'- gCGCGCAGCCaaGgCGGCGcgcgCCGa -3'
miRNA:   3'- -GCGCGUCGGcgCaGCCGCuacaGGCc -5'
26066 3' -60.9 NC_005342.2 + 38013 0.66 0.423499
Target:  5'- aCGCGCGaCCGUGcacgCGGCGA---CCGGc -3'
miRNA:   3'- -GCGCGUcGGCGCa---GCCGCUacaGGCC- -5'
26066 3' -60.9 NC_005342.2 + 21087 0.66 0.423499
Target:  5'- aCGUGCGGCuucacgaaCGcCGUCGGUcuGAUGUUCGc -3'
miRNA:   3'- -GCGCGUCG--------GC-GCAGCCG--CUACAGGCc -5'
26066 3' -60.9 NC_005342.2 + 43441 0.66 0.423499
Target:  5'- aCGCGUcgcaacaauGGCCcGCGUUGGCGG-GUuuGa -3'
miRNA:   3'- -GCGCG---------UCGG-CGCAGCCGCUaCAggCc -5'
26066 3' -60.9 NC_005342.2 + 17914 0.66 0.423499
Target:  5'- gGUGCGGCCGCGcgccUGGCGGguggcGUCgcaGGu -3'
miRNA:   3'- gCGCGUCGGCGCa---GCCGCUa----CAGg--CC- -5'
26066 3' -60.9 NC_005342.2 + 42783 0.66 0.423499
Target:  5'- gGUGCcgacGCCGCGccugcaGGCGAUGUUCa- -3'
miRNA:   3'- gCGCGu---CGGCGCag----CCGCUACAGGcc -5'
26066 3' -60.9 NC_005342.2 + 29361 0.66 0.423499
Target:  5'- cCGCGCcuGCCGCGcCGGUcguuuguugcacGAacggGUUCGGa -3'
miRNA:   3'- -GCGCGu-CGGCGCaGCCG------------CUa---CAGGCC- -5'
26066 3' -60.9 NC_005342.2 + 46128 0.66 0.422588
Target:  5'- aGCGgGGCUGgaucgaaUGgaagggCGGCGAgUGUCCGGu -3'
miRNA:   3'- gCGCgUCGGC-------GCa-----GCCGCU-ACAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.