miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26066 5' -54.4 NC_005342.2 + 20741 0.66 0.755687
Target:  5'- uGCCGgaCAUCGCCGacg-CGgCUGCGc -3'
miRNA:   3'- gCGGCa-GUAGUGGCguaaGCaGACGC- -5'
26066 5' -54.4 NC_005342.2 + 42747 0.66 0.749425
Target:  5'- gGCCGgcuUCAUCGCCGaauaccccgaGUUUGCGa -3'
miRNA:   3'- gCGGC---AGUAGUGGCguaag-----CAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 46064 0.66 0.745227
Target:  5'- gCGCCGUUAUgCGCCGCug-CGgauuugGCGc -3'
miRNA:   3'- -GCGGCAGUA-GUGGCGuaaGCaga---CGC- -5'
26066 5' -54.4 NC_005342.2 + 4889 0.66 0.735713
Target:  5'- gCGCCGUCGccauccaaaacaucgCGCCGUAcugCGUCUGg- -3'
miRNA:   3'- -GCGGCAGUa--------------GUGGCGUaa-GCAGACgc -5'
26066 5' -54.4 NC_005342.2 + 3664 0.66 0.73465
Target:  5'- aGCCGUCgcGUCguaGCUGCGgaUCGUCUGg- -3'
miRNA:   3'- gCGGCAG--UAG---UGGCGUa-AGCAGACgc -5'
26066 5' -54.4 NC_005342.2 + 1286 0.66 0.73465
Target:  5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3'
miRNA:   3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5'
26066 5' -54.4 NC_005342.2 + 34447 0.66 0.723969
Target:  5'- cCGCCGgcggCAaCGCCGCGagcaCGUCggacgGCGa -3'
miRNA:   3'- -GCGGCa---GUaGUGGCGUaa--GCAGa----CGC- -5'
26066 5' -54.4 NC_005342.2 + 2126 0.66 0.723969
Target:  5'- uGCCGUagcgcgCACCGCGcUCGgccaaggUUGCGg -3'
miRNA:   3'- gCGGCAgua---GUGGCGUaAGCa------GACGC- -5'
26066 5' -54.4 NC_005342.2 + 30394 0.66 0.723969
Target:  5'- aGCCGUUcgCGCCGCcgcCGgcgGCGg -3'
miRNA:   3'- gCGGCAGuaGUGGCGuaaGCagaCGC- -5'
26066 5' -54.4 NC_005342.2 + 28481 0.66 0.713194
Target:  5'- gCGCCG-CGUCgACCGCGcggGUCgcgGCGg -3'
miRNA:   3'- -GCGGCaGUAG-UGGCGUaagCAGa--CGC- -5'
26066 5' -54.4 NC_005342.2 + 22572 0.67 0.702338
Target:  5'- cCGCCGUCGUCACgacaucggCGCucgugUUGUUcGCGu -3'
miRNA:   3'- -GCGGCAGUAGUG--------GCGua---AGCAGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 3164 0.67 0.701248
Target:  5'- cCGCCGUUuUCuugcccgggcgcgGCCGCGcgguguucagCGUCUGCGc -3'
miRNA:   3'- -GCGGCAGuAG-------------UGGCGUaa--------GCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 26632 0.67 0.691412
Target:  5'- uCGuuGUCG-CACCGCcgcUCGUgaGCGu -3'
miRNA:   3'- -GCggCAGUaGUGGCGua-AGCAgaCGC- -5'
26066 5' -54.4 NC_005342.2 + 20662 0.67 0.680429
Target:  5'- gGCCG-CAUCAUCGguUUCGcCgGCu -3'
miRNA:   3'- gCGGCaGUAGUGGCguAAGCaGaCGc -5'
26066 5' -54.4 NC_005342.2 + 37101 0.67 0.680429
Target:  5'- gGCCGUCcUCAUCGUccuaCGUCgGCGc -3'
miRNA:   3'- gCGGCAGuAGUGGCGuaa-GCAGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 33135 0.67 0.679328
Target:  5'- cCGgCGUCAUUcugaucgGCaCGCcgUgGUCUGCGa -3'
miRNA:   3'- -GCgGCAGUAG-------UG-GCGuaAgCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 36403 0.67 0.669398
Target:  5'- aCGUCGacaAUCAgCGCAUguggcaaucgCGUCUGCGc -3'
miRNA:   3'- -GCGGCag-UAGUgGCGUAa---------GCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 15858 0.68 0.647241
Target:  5'- aGCCGcCGUgACCGCcaUCGUagacgaUGCGa -3'
miRNA:   3'- gCGGCaGUAgUGGCGuaAGCAg-----ACGC- -5'
26066 5' -54.4 NC_005342.2 + 41091 0.68 0.613924
Target:  5'- aCGCCGcUGUCGCCGCGauccgcUCGauggCUGCGc -3'
miRNA:   3'- -GCGGCaGUAGUGGCGUa-----AGCa---GACGC- -5'
26066 5' -54.4 NC_005342.2 + 36166 0.68 0.602838
Target:  5'- gCGCCGUCGcgcugaUgGCCGCGU-CGUacUUGCGc -3'
miRNA:   3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.