miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26066 5' -54.4 NC_005342.2 + 27244 1.1 0.001033
Target:  5'- gCGCCGUCAUCACCGCAUUCGUCUGCGa -3'
miRNA:   3'- -GCGGCAGUAGUGGCGUAAGCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 27223 0.79 0.140009
Target:  5'- uCGCCGUCGUgAUCGCAg-CGUCUGCc -3'
miRNA:   3'- -GCGGCAGUAgUGGCGUaaGCAGACGc -5'
26066 5' -54.4 NC_005342.2 + 23206 0.78 0.174735
Target:  5'- aGCgaUCGUCGCCGCGUUCGUgaGCGg -3'
miRNA:   3'- gCGgcAGUAGUGGCGUAAGCAgaCGC- -5'
26066 5' -54.4 NC_005342.2 + 20409 0.74 0.303789
Target:  5'- gCGCCGcUCGUCACCGCcUUCGaaaacacguUCgGCGg -3'
miRNA:   3'- -GCGGC-AGUAGUGGCGuAAGC---------AGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 9490 0.73 0.327289
Target:  5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3'
miRNA:   3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5'
26066 5' -54.4 NC_005342.2 + 1579 0.73 0.349567
Target:  5'- uCGCCGUUcUCgACCGCAUccgggucgaaagcgUCGUCgGCGg -3'
miRNA:   3'- -GCGGCAGuAG-UGGCGUA--------------AGCAGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 2816 0.72 0.369381
Target:  5'- gCGCCGUCggCGCCGCcgaaaccgaGUgccagGUCUGCGg -3'
miRNA:   3'- -GCGGCAGuaGUGGCG---------UAag---CAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 16095 0.72 0.405627
Target:  5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3'
miRNA:   3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5'
26066 5' -54.4 NC_005342.2 + 3369 0.71 0.444032
Target:  5'- uCGCCGUCGUCGCgggaGC-UUCGgugaagaacagCUGCGg -3'
miRNA:   3'- -GCGGCAGUAGUGg---CGuAAGCa----------GACGC- -5'
26066 5' -54.4 NC_005342.2 + 9774 0.71 0.453949
Target:  5'- aGCCGUCAUC-CgGCcgUCGUaugcCUGCc -3'
miRNA:   3'- gCGGCAGUAGuGgCGuaAGCA----GACGc -5'
26066 5' -54.4 NC_005342.2 + 45414 0.69 0.537163
Target:  5'- gGCCGUgAUUGCCGa--UCGUCUcGCGu -3'
miRNA:   3'- gCGGCAgUAGUGGCguaAGCAGA-CGC- -5'
26066 5' -54.4 NC_005342.2 + 45602 0.69 0.547967
Target:  5'- gCGCCGUCAUgggcuaCGCCGCGUcgaucaacuUCcagCUGCGc -3'
miRNA:   3'- -GCGGCAGUA------GUGGCGUA---------AGca-GACGC- -5'
26066 5' -54.4 NC_005342.2 + 241 0.69 0.577452
Target:  5'- gGUCGUCA-CGCCGCcgagcacggucacgGUcgaCGUCUGCGg -3'
miRNA:   3'- gCGGCAGUaGUGGCG--------------UAa--GCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 36166 0.68 0.602838
Target:  5'- gCGCCGUCGcgcugaUgGCCGCGU-CGUacUUGCGc -3'
miRNA:   3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5'
26066 5' -54.4 NC_005342.2 + 41091 0.68 0.613924
Target:  5'- aCGCCGcUGUCGCCGCGauccgcUCGauggCUGCGc -3'
miRNA:   3'- -GCGGCaGUAGUGGCGUa-----AGCa---GACGC- -5'
26066 5' -54.4 NC_005342.2 + 15858 0.68 0.647241
Target:  5'- aGCCGcCGUgACCGCcaUCGUagacgaUGCGa -3'
miRNA:   3'- gCGGCaGUAgUGGCGuaAGCAg-----ACGC- -5'
26066 5' -54.4 NC_005342.2 + 36403 0.67 0.669398
Target:  5'- aCGUCGacaAUCAgCGCAUguggcaaucgCGUCUGCGc -3'
miRNA:   3'- -GCGGCag-UAGUgGCGUAa---------GCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 33135 0.67 0.679328
Target:  5'- cCGgCGUCAUUcugaucgGCaCGCcgUgGUCUGCGa -3'
miRNA:   3'- -GCgGCAGUAG-------UG-GCGuaAgCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 37101 0.67 0.680429
Target:  5'- gGCCGUCcUCAUCGUccuaCGUCgGCGc -3'
miRNA:   3'- gCGGCAGuAGUGGCGuaa-GCAGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 20662 0.67 0.680429
Target:  5'- gGCCG-CAUCAUCGguUUCGcCgGCu -3'
miRNA:   3'- gCGGCaGUAGUGGCguAAGCaGaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.