miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26066 5' -54.4 NC_005342.2 + 241 0.69 0.577452
Target:  5'- gGUCGUCA-CGCCGCcgagcacggucacgGUcgaCGUCUGCGg -3'
miRNA:   3'- gCGGCAGUaGUGGCG--------------UAa--GCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 1286 0.66 0.73465
Target:  5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3'
miRNA:   3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5'
26066 5' -54.4 NC_005342.2 + 1579 0.73 0.349567
Target:  5'- uCGCCGUUcUCgACCGCAUccgggucgaaagcgUCGUCgGCGg -3'
miRNA:   3'- -GCGGCAGuAG-UGGCGUA--------------AGCAGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 2126 0.66 0.723969
Target:  5'- uGCCGUagcgcgCACCGCGcUCGgccaaggUUGCGg -3'
miRNA:   3'- gCGGCAgua---GUGGCGUaAGCa------GACGC- -5'
26066 5' -54.4 NC_005342.2 + 2816 0.72 0.369381
Target:  5'- gCGCCGUCggCGCCGCcgaaaccgaGUgccagGUCUGCGg -3'
miRNA:   3'- -GCGGCAGuaGUGGCG---------UAag---CAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 3164 0.67 0.701248
Target:  5'- cCGCCGUUuUCuugcccgggcgcgGCCGCGcgguguucagCGUCUGCGc -3'
miRNA:   3'- -GCGGCAGuAG-------------UGGCGUaa--------GCAGACGC- -5'
26066 5' -54.4 NC_005342.2 + 3369 0.71 0.444032
Target:  5'- uCGCCGUCGUCGCgggaGC-UUCGgugaagaacagCUGCGg -3'
miRNA:   3'- -GCGGCAGUAGUGg---CGuAAGCa----------GACGC- -5'
26066 5' -54.4 NC_005342.2 + 3664 0.66 0.73465
Target:  5'- aGCCGUCgcGUCguaGCUGCGgaUCGUCUGg- -3'
miRNA:   3'- gCGGCAG--UAG---UGGCGUa-AGCAGACgc -5'
26066 5' -54.4 NC_005342.2 + 4889 0.66 0.735713
Target:  5'- gCGCCGUCGccauccaaaacaucgCGCCGUAcugCGUCUGg- -3'
miRNA:   3'- -GCGGCAGUa--------------GUGGCGUaa-GCAGACgc -5'
26066 5' -54.4 NC_005342.2 + 9490 0.73 0.327289
Target:  5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3'
miRNA:   3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5'
26066 5' -54.4 NC_005342.2 + 9774 0.71 0.453949
Target:  5'- aGCCGUCAUC-CgGCcgUCGUaugcCUGCc -3'
miRNA:   3'- gCGGCAGUAGuGgCGuaAGCA----GACGc -5'
26066 5' -54.4 NC_005342.2 + 15858 0.68 0.647241
Target:  5'- aGCCGcCGUgACCGCcaUCGUagacgaUGCGa -3'
miRNA:   3'- gCGGCaGUAgUGGCGuaAGCAg-----ACGC- -5'
26066 5' -54.4 NC_005342.2 + 16095 0.72 0.405627
Target:  5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3'
miRNA:   3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5'
26066 5' -54.4 NC_005342.2 + 20409 0.74 0.303789
Target:  5'- gCGCCGcUCGUCACCGCcUUCGaaaacacguUCgGCGg -3'
miRNA:   3'- -GCGGC-AGUAGUGGCGuAAGC---------AGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 20662 0.67 0.680429
Target:  5'- gGCCG-CAUCAUCGguUUCGcCgGCu -3'
miRNA:   3'- gCGGCaGUAGUGGCguAAGCaGaCGc -5'
26066 5' -54.4 NC_005342.2 + 20741 0.66 0.755687
Target:  5'- uGCCGgaCAUCGCCGacg-CGgCUGCGc -3'
miRNA:   3'- gCGGCa-GUAGUGGCguaaGCaGACGC- -5'
26066 5' -54.4 NC_005342.2 + 22572 0.67 0.702338
Target:  5'- cCGCCGUCGUCACgacaucggCGCucgugUUGUUcGCGu -3'
miRNA:   3'- -GCGGCAGUAGUG--------GCGua---AGCAGaCGC- -5'
26066 5' -54.4 NC_005342.2 + 23206 0.78 0.174735
Target:  5'- aGCgaUCGUCGCCGCGUUCGUgaGCGg -3'
miRNA:   3'- gCGgcAGUAGUGGCGUAAGCAgaCGC- -5'
26066 5' -54.4 NC_005342.2 + 26632 0.67 0.691412
Target:  5'- uCGuuGUCG-CACCGCcgcUCGUgaGCGu -3'
miRNA:   3'- -GCggCAGUaGUGGCGua-AGCAgaCGC- -5'
26066 5' -54.4 NC_005342.2 + 27223 0.79 0.140009
Target:  5'- uCGCCGUCGUgAUCGCAg-CGUCUGCc -3'
miRNA:   3'- -GCGGCAGUAgUGGCGUaaGCAGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.