miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26067 3' -52.9 NC_005342.2 + 35832 0.66 0.78724
Target:  5'- cGCAaGGUUGGCGa-CG--GCCUGCgCg -3'
miRNA:   3'- -CGUaUCAACCGCggGUauUGGACGgG- -5'
26067 3' -52.9 NC_005342.2 + 4382 0.66 0.776996
Target:  5'- cCGUGGUUGaaGCCCuucuuuCCgGCCCa -3'
miRNA:   3'- cGUAUCAACcgCGGGuauu--GGaCGGG- -5'
26067 3' -52.9 NC_005342.2 + 22186 0.66 0.776996
Target:  5'- gGCGgcGGUUcGGCGgCUGcGGCCUGCUCg -3'
miRNA:   3'- -CGUa-UCAA-CCGCgGGUaUUGGACGGG- -5'
26067 3' -52.9 NC_005342.2 + 1084 0.66 0.766593
Target:  5'- cGCugcGgcGGCGCgCCAaaugcgucgagUAACCgUGCCCg -3'
miRNA:   3'- -CGuauCaaCCGCG-GGU-----------AUUGG-ACGGG- -5'
26067 3' -52.9 NC_005342.2 + 40672 0.67 0.756043
Target:  5'- gGCAggcacgUGGgGCgCCGUGAUCUuccGCCCg -3'
miRNA:   3'- -CGUauca--ACCgCG-GGUAUUGGA---CGGG- -5'
26067 3' -52.9 NC_005342.2 + 8628 0.67 0.73455
Target:  5'- -------cGGCGCCCG--GCUUGCUCg -3'
miRNA:   3'- cguaucaaCCGCGGGUauUGGACGGG- -5'
26067 3' -52.9 NC_005342.2 + 44050 0.67 0.73455
Target:  5'- gGCGUcAGcacGGCuaCCAcGAUCUGCCCg -3'
miRNA:   3'- -CGUA-UCaa-CCGcgGGUaUUGGACGGG- -5'
26067 3' -52.9 NC_005342.2 + 31032 0.67 0.73455
Target:  5'- cGCcgAGcacGGCGCCCGcaauGCCgGCCa -3'
miRNA:   3'- -CGuaUCaa-CCGCGGGUau--UGGaCGGg -5'
26067 3' -52.9 NC_005342.2 + 28422 0.67 0.71262
Target:  5'- -------cGGCGCCCAUcAGCUugcgaacgauUGCCCa -3'
miRNA:   3'- cguaucaaCCGCGGGUA-UUGG----------ACGGG- -5'
26067 3' -52.9 NC_005342.2 + 37412 0.67 0.71262
Target:  5'- gGCGcg--UGGCgGCUCaAUGGCCUGCUCg -3'
miRNA:   3'- -CGUaucaACCG-CGGG-UAUUGGACGGG- -5'
26067 3' -52.9 NC_005342.2 + 27150 0.67 0.71262
Target:  5'- uGUAUGGUgucGGCGCgcgaucagCCAU-GCgUGCCCc -3'
miRNA:   3'- -CGUAUCAa--CCGCG--------GGUAuUGgACGGG- -5'
26067 3' -52.9 NC_005342.2 + 100 0.68 0.701523
Target:  5'- gGCGcGGUgcgcGCGCCCGguugccGCCUGCgCCu -3'
miRNA:   3'- -CGUaUCAac--CGCGGGUau----UGGACG-GG- -5'
26067 3' -52.9 NC_005342.2 + 45170 0.68 0.676873
Target:  5'- aGCAUGGcggccaacuacGGCGUCCAccuGCC-GCCCg -3'
miRNA:   3'- -CGUAUCaa---------CCGCGGGUau-UGGaCGGG- -5'
26067 3' -52.9 NC_005342.2 + 39384 0.68 0.667848
Target:  5'- cGCcgAGgcGGCGCgCuuccuggucGGCCUGCCUg -3'
miRNA:   3'- -CGuaUCaaCCGCGgGua-------UUGGACGGG- -5'
26067 3' -52.9 NC_005342.2 + 29351 0.68 0.656536
Target:  5'- ---gGGUUGcCGCCCGc-GCCUGCCg -3'
miRNA:   3'- cguaUCAACcGCGGGUauUGGACGGg -5'
26067 3' -52.9 NC_005342.2 + 44153 0.68 0.6452
Target:  5'- cGCGUGcgaGGCGCU--UGGCCUGCCg -3'
miRNA:   3'- -CGUAUcaaCCGCGGguAUUGGACGGg -5'
26067 3' -52.9 NC_005342.2 + 7287 0.69 0.633851
Target:  5'- -------cGGCGCCCcacguGCCUGCCg -3'
miRNA:   3'- cguaucaaCCGCGGGuau--UGGACGGg -5'
26067 3' -52.9 NC_005342.2 + 25120 0.69 0.622501
Target:  5'- aGCAcGGc-GGCGCgCaCGUucgcGGCCUGCCCg -3'
miRNA:   3'- -CGUaUCaaCCGCG-G-GUA----UUGGACGGG- -5'
26067 3' -52.9 NC_005342.2 + 38336 0.69 0.61116
Target:  5'- cGCugcccgUGGUGCCCGUucuGAUCgGCCCg -3'
miRNA:   3'- -CGuauca-ACCGCGGGUA---UUGGaCGGG- -5'
26067 3' -52.9 NC_005342.2 + 45686 0.7 0.543853
Target:  5'- cGCGgcgAGgcgUGGUGuCCCG--GCCUGCCa -3'
miRNA:   3'- -CGUa--UCa--ACCGC-GGGUauUGGACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.