miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26070 5' -51.9 NC_005342.2 + 25793 0.66 0.836811
Target:  5'- gGCUGc----CGCCGGCGaCAAGGAGAa -3'
miRNA:   3'- gCGACuaagcGCGGCUGC-GUUUCUUU- -5'
26070 5' -51.9 NC_005342.2 + 15778 0.66 0.817855
Target:  5'- gCGUUcGA-UCGCGCCGACGCc------ -3'
miRNA:   3'- -GCGA-CUaAGCGCGGCUGCGuuucuuu -5'
26070 5' -51.9 NC_005342.2 + 10827 0.66 0.816885
Target:  5'- aCGCUGucaCGCGCuUGACGCcgcgcggGAAGAAc -3'
miRNA:   3'- -GCGACuaaGCGCG-GCUGCG-------UUUCUUu -5'
26070 5' -51.9 NC_005342.2 + 4194 0.66 0.808053
Target:  5'- aGCUG---CGCGuuGACGCucGAGAAc -3'
miRNA:   3'- gCGACuaaGCGCggCUGCGu-UUCUUu -5'
26070 5' -51.9 NC_005342.2 + 44755 0.66 0.808053
Target:  5'- gCGCUGGcggCGCGCaGACGCu--GAAc -3'
miRNA:   3'- -GCGACUaa-GCGCGgCUGCGuuuCUUu -5'
26070 5' -51.9 NC_005342.2 + 47240 0.67 0.798049
Target:  5'- gCGCUGAacgaggCGCcgGCCGGCGCGAc---- -3'
miRNA:   3'- -GCGACUaa----GCG--CGGCUGCGUUucuuu -5'
26070 5' -51.9 NC_005342.2 + 5552 0.67 0.798049
Target:  5'- cCGCUcg-UCG-GCCGGCGUGGAGAc- -3'
miRNA:   3'- -GCGAcuaAGCgCGGCUGCGUUUCUuu -5'
26070 5' -51.9 NC_005342.2 + 36519 0.67 0.766949
Target:  5'- gCGCUGAUUCGC-UCGAucuCGCAG-GAAu -3'
miRNA:   3'- -GCGACUAAGCGcGGCU---GCGUUuCUUu -5'
26070 5' -51.9 NC_005342.2 + 10102 0.67 0.756263
Target:  5'- gGCcGggUCgGCGUCGaACGCGAAGAAc -3'
miRNA:   3'- gCGaCuaAG-CGCGGC-UGCGUUUCUUu -5'
26070 5' -51.9 NC_005342.2 + 12102 0.67 0.756263
Target:  5'- gCGUUGAaggUUGCGCCGGuCGCGcAGGc- -3'
miRNA:   3'- -GCGACUa--AGCGCGGCU-GCGUuUCUuu -5'
26070 5' -51.9 NC_005342.2 + 20803 0.68 0.745438
Target:  5'- gGCUGAUcgCGCGCCGACa-------- -3'
miRNA:   3'- gCGACUAa-GCGCGGCUGcguuucuuu -5'
26070 5' -51.9 NC_005342.2 + 3306 0.68 0.713384
Target:  5'- aGCUGccgacuucuucggCGCGCgCGACGCAucGAGAc -3'
miRNA:   3'- gCGACuaa----------GCGCG-GCUGCGUuuCUUU- -5'
26070 5' -51.9 NC_005342.2 + 42209 0.68 0.701016
Target:  5'- gCGCUGA--UGCGCUGACGaucauCGAAGAc- -3'
miRNA:   3'- -GCGACUaaGCGCGGCUGC-----GUUUCUuu -5'
26070 5' -51.9 NC_005342.2 + 20414 0.69 0.678314
Target:  5'- gCGCaGAUUCGCcCCGGCGCGGc---- -3'
miRNA:   3'- -GCGaCUAAGCGcGGCUGCGUUucuuu -5'
26070 5' -51.9 NC_005342.2 + 32698 0.69 0.666885
Target:  5'- uGCUGAUgcugacCGCGCCGcCGCAGc---- -3'
miRNA:   3'- gCGACUAa-----GCGCGGCuGCGUUucuuu -5'
26070 5' -51.9 NC_005342.2 + 45728 0.69 0.632432
Target:  5'- gGCUGGcacggccUGCGCUGGCGUAAGGAu- -3'
miRNA:   3'- gCGACUaa-----GCGCGGCUGCGUUUCUuu -5'
26070 5' -51.9 NC_005342.2 + 44134 0.7 0.620932
Target:  5'- uGCcgGGUUCGCuuGCCGGCGCGugcGAGGc- -3'
miRNA:   3'- gCGa-CUAAGCG--CGGCUGCGU---UUCUuu -5'
26070 5' -51.9 NC_005342.2 + 20557 0.7 0.614036
Target:  5'- cCGCUGAUcgucggcgcgucgggUCGCGCCGugGUg------ -3'
miRNA:   3'- -GCGACUA---------------AGCGCGGCugCGuuucuuu -5'
26070 5' -51.9 NC_005342.2 + 8908 0.7 0.609442
Target:  5'- gGCUucGUUCGCGCCGGCGCu------ -3'
miRNA:   3'- gCGAc-UAAGCGCGGCUGCGuuucuuu -5'
26070 5' -51.9 NC_005342.2 + 36157 0.71 0.530164
Target:  5'- aGCUGGagCGCGCCGuCGCGcuGAu- -3'
miRNA:   3'- gCGACUaaGCGCGGCuGCGUuuCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.