miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26071 3' -64.6 NC_005342.2 + 22548 0.66 0.300539
Target:  5'- aCCGCCGGcacacugcaagcgcgAUCGCCGgaCGGUUcGCUGUg -3'
miRNA:   3'- -GGCGGCU---------------UGGCGGCg-GCCGA-CGGCGg -5'
26071 3' -64.6 NC_005342.2 + 24992 0.66 0.297743
Target:  5'- aCCG-CGAcGCUGCCGgCGGCgaacaGCuUGCCg -3'
miRNA:   3'- -GGCgGCU-UGGCGGCgGCCGa----CG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 17941 0.66 0.297743
Target:  5'- gUCGCaGGugCGaCGgCGGCcaGCCGCCg -3'
miRNA:   3'- -GGCGgCUugGCgGCgGCCGa-CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 3478 0.66 0.297743
Target:  5'- aCgGCCaagauGCCGCCGUCGGUcagGUagGCCa -3'
miRNA:   3'- -GgCGGcu---UGGCGGCGGCCGa--CGg-CGG- -5'
26071 3' -64.6 NC_005342.2 + 27371 0.66 0.297743
Target:  5'- gCCGUgGAAgugcCCGgCGCgaCGGCcgUGCCGUCa -3'
miRNA:   3'- -GGCGgCUU----GGCgGCG--GCCG--ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 39031 0.66 0.297743
Target:  5'- -aGCCGAuUCGCuCGgCGGCgGCgCGCUu -3'
miRNA:   3'- ggCGGCUuGGCG-GCgGCCGaCG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 10925 0.66 0.297047
Target:  5'- gCGUCGAgcACCGCCGCgaccgacUGGaacgcGUCGCCu -3'
miRNA:   3'- gGCGGCU--UGGCGGCG-------GCCga---CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 15954 0.66 0.294967
Target:  5'- aCGUCGAcAUCGCCGCgacccgcgccaucCGgaaggcuuucggccGCUGCUGCCa -3'
miRNA:   3'- gGCGGCU-UGGCGGCG-------------GC--------------CGACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 32046 0.66 0.29084
Target:  5'- gCGCgUGcACgGCUGCCGGgUcGCUGCCc -3'
miRNA:   3'- gGCG-GCuUGgCGGCGGCCgA-CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 27274 0.66 0.29084
Target:  5'- -gGCUGAACgguCGCCacgaGCCGGCgaaaccgaugaUGCgGCCa -3'
miRNA:   3'- ggCGGCUUG---GCGG----CGGCCG-----------ACGgCGG- -5'
26071 3' -64.6 NC_005342.2 + 25874 0.66 0.29084
Target:  5'- gCGCuUGGugCGCgagcgccaagCGCCGcGCUucGCCGCCc -3'
miRNA:   3'- gGCG-GCUugGCG----------GCGGC-CGA--CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 20550 0.66 0.29084
Target:  5'- -gGCCGcGCCGCugauCGUCGGCgcgucggGUCGCg -3'
miRNA:   3'- ggCGGCuUGGCG----GCGGCCGa------CGGCGg -5'
26071 3' -64.6 NC_005342.2 + 15084 0.66 0.29084
Target:  5'- -aGCCG-GCCGCgUGCCGGCUuCUuuuuuGCCu -3'
miRNA:   3'- ggCGGCuUGGCG-GCGGCCGAcGG-----CGG- -5'
26071 3' -64.6 NC_005342.2 + 45547 0.66 0.29084
Target:  5'- uUCGCCG---CGCCGUaccaaGGCacguUGCCGCUg -3'
miRNA:   3'- -GGCGGCuugGCGGCGg----CCG----ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 10545 0.66 0.29084
Target:  5'- -gGCCauuGAGCCGCCacgcGCCGG--GCCgGCCg -3'
miRNA:   3'- ggCGG---CUUGGCGG----CGGCCgaCGG-CGG- -5'
26071 3' -64.6 NC_005342.2 + 26225 0.66 0.29084
Target:  5'- cUCGUCGAACuuCGCUGCguCGaGCUGCUGgCg -3'
miRNA:   3'- -GGCGGCUUG--GCGGCG--GC-CGACGGCgG- -5'
26071 3' -64.6 NC_005342.2 + 35000 0.66 0.29084
Target:  5'- uUGUCGAugCG-CGCCGaGCUGaucaaCCGCUa -3'
miRNA:   3'- gGCGGCUugGCgGCGGC-CGAC-----GGCGG- -5'
26071 3' -64.6 NC_005342.2 + 16093 0.66 0.29084
Target:  5'- cCUGCCGAcagUCGCCGCguucgaCGuGCUGgCGCUu -3'
miRNA:   3'- -GGCGGCUu--GGCGGCG------GC-CGACgGCGG- -5'
26071 3' -64.6 NC_005342.2 + 44306 0.66 0.290157
Target:  5'- -gGUCGGcgugugggagagcACCG-UGCC-GCUGCCGCCg -3'
miRNA:   3'- ggCGGCU-------------UGGCgGCGGcCGACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 8717 0.66 0.284064
Target:  5'- gCGCCGcAACCgaugucgauauaGCCGaUCGGCgUGUCGUCc -3'
miRNA:   3'- gGCGGC-UUGG------------CGGC-GGCCG-ACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.