miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26071 3' -64.6 NC_005342.2 + 27371 0.66 0.297743
Target:  5'- gCCGUgGAAgugcCCGgCGCgaCGGCcgUGCCGUCa -3'
miRNA:   3'- -GGCGgCUU----GGCgGCG--GCCG--ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 8717 0.66 0.284064
Target:  5'- gCGCCGcAACCgaugucgauauaGCCGaUCGGCgUGUCGUCc -3'
miRNA:   3'- gGCGGC-UUGG------------CGGC-GGCCG-ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 11079 0.66 0.284064
Target:  5'- gUCGCCG---CGCUGCgGGaUGCCGCa -3'
miRNA:   3'- -GGCGGCuugGCGGCGgCCgACGGCGg -5'
26071 3' -64.6 NC_005342.2 + 33716 0.66 0.282055
Target:  5'- aUGCuCGAaggcguGCCGCCGCuCGGCUcgaaagaggcgcgcGCgcaCGCCg -3'
miRNA:   3'- gGCG-GCU------UGGCGGCG-GCCGA--------------CG---GCGG- -5'
26071 3' -64.6 NC_005342.2 + 23745 0.66 0.277413
Target:  5'- gCGCCGuuuuACgGCgGCCaGGCgGCCGguaCCg -3'
miRNA:   3'- gGCGGCu---UGgCGgCGG-CCGaCGGC---GG- -5'
26071 3' -64.6 NC_005342.2 + 22227 0.66 0.277413
Target:  5'- aCGCCGAcugGCCuGCagcugGCCGGCgaGCaaGCCa -3'
miRNA:   3'- gGCGGCU---UGG-CGg----CGGCCGa-CGg-CGG- -5'
26071 3' -64.6 NC_005342.2 + 14358 0.66 0.277413
Target:  5'- aCCGCaccGCUGUCGCUGGCcgacucgGCUGCa -3'
miRNA:   3'- -GGCGgcuUGGCGGCGGCCGa------CGGCGg -5'
26071 3' -64.6 NC_005342.2 + 12335 0.66 0.277413
Target:  5'- uUCGCCGAugUGgCGUauaaCGGCgUGCgCGUCg -3'
miRNA:   3'- -GGCGGCUugGCgGCG----GCCG-ACG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 8146 0.66 0.275442
Target:  5'- gCCGCCuuGGCCGCauggaucgugauauCG-CGGUucuUGCCGCCg -3'
miRNA:   3'- -GGCGGc-UUGGCG--------------GCgGCCG---ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 15084 0.66 0.29084
Target:  5'- -aGCCG-GCCGCgUGCCGGCUuCUuuuuuGCCu -3'
miRNA:   3'- ggCGGCuUGGCG-GCGGCCGAcGG-----CGG- -5'
26071 3' -64.6 NC_005342.2 + 45547 0.66 0.29084
Target:  5'- uUCGCCG---CGCCGUaccaaGGCacguUGCCGCUg -3'
miRNA:   3'- -GGCGGCuugGCGGCGg----CCG----ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 10545 0.66 0.29084
Target:  5'- -gGCCauuGAGCCGCCacgcGCCGG--GCCgGCCg -3'
miRNA:   3'- ggCGG---CUUGGCGG----CGGCCgaCGG-CGG- -5'
26071 3' -64.6 NC_005342.2 + 24992 0.66 0.297743
Target:  5'- aCCG-CGAcGCUGCCGgCGGCgaacaGCuUGCCg -3'
miRNA:   3'- -GGCgGCU-UGGCGGCgGCCGa----CG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 17941 0.66 0.297743
Target:  5'- gUCGCaGGugCGaCGgCGGCcaGCCGCCg -3'
miRNA:   3'- -GGCGgCUugGCgGCgGCCGa-CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 3478 0.66 0.297743
Target:  5'- aCgGCCaagauGCCGCCGUCGGUcagGUagGCCa -3'
miRNA:   3'- -GgCGGcu---UGGCGGCGGCCGa--CGg-CGG- -5'
26071 3' -64.6 NC_005342.2 + 10925 0.66 0.297047
Target:  5'- gCGUCGAgcACCGCCGCgaccgacUGGaacgcGUCGCCu -3'
miRNA:   3'- gGCGGCU--UGGCGGCG-------GCCga---CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 15954 0.66 0.294967
Target:  5'- aCGUCGAcAUCGCCGCgacccgcgccaucCGgaaggcuuucggccGCUGCUGCCa -3'
miRNA:   3'- gGCGGCU-UGGCGGCG-------------GC--------------CGACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 16093 0.66 0.29084
Target:  5'- cCUGCCGAcagUCGCCGCguucgaCGuGCUGgCGCUu -3'
miRNA:   3'- -GGCGGCUu--GGCGGCG------GC-CGACgGCGG- -5'
26071 3' -64.6 NC_005342.2 + 35000 0.66 0.29084
Target:  5'- uUGUCGAugCG-CGCCGaGCUGaucaaCCGCUa -3'
miRNA:   3'- gGCGGCUugGCgGCGGC-CGAC-----GGCGG- -5'
26071 3' -64.6 NC_005342.2 + 26225 0.66 0.29084
Target:  5'- cUCGUCGAACuuCGCUGCguCGaGCUGCUGgCg -3'
miRNA:   3'- -GGCGGCUUG--GCGGCG--GC-CGACGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.