miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26071 3' -64.6 NC_005342.2 + 20493 0.9 0.004427
Target:  5'- gCUGCCGcgcAACCGCUGCCGGCcGCCGCCg -3'
miRNA:   3'- -GGCGGC---UUGGCGGCGGCCGaCGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 30204 0.74 0.078863
Target:  5'- uUGUCGAGCCcgagcgugcgGCCGaCCaGGCUGCCgGCCa -3'
miRNA:   3'- gGCGGCUUGG----------CGGC-GG-CCGACGG-CGG- -5'
26071 3' -64.6 NC_005342.2 + 35184 0.73 0.087808
Target:  5'- aCGUCGGcACCGUCaacggGCCGGUgagcgUGCCGCCu -3'
miRNA:   3'- gGCGGCU-UGGCGG-----CGGCCG-----ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 27371 0.66 0.297743
Target:  5'- gCCGUgGAAgugcCCGgCGCgaCGGCcgUGCCGUCa -3'
miRNA:   3'- -GGCGgCUU----GGCgGCG--GCCG--ACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 4835 0.79 0.030295
Target:  5'- gCGCCGuGCCGauGCC-GCUGCCGCCg -3'
miRNA:   3'- gGCGGCuUGGCggCGGcCGACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 30394 0.79 0.032015
Target:  5'- -aGCCGuucgcGCCGCCGCCGGCgGCgGCa -3'
miRNA:   3'- ggCGGCu----UGGCGGCGGCCGaCGgCGg -5'
26071 3' -64.6 NC_005342.2 + 38404 0.77 0.043339
Target:  5'- gCCGCCGcGCUgaaauucccgcaGCCGCCGGC-GCuCGCCu -3'
miRNA:   3'- -GGCGGCuUGG------------CGGCGGCCGaCG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 39525 0.77 0.047055
Target:  5'- gCCGuCCGAACgCGCauacCCGGCUGCCGUg -3'
miRNA:   3'- -GGC-GGCUUG-GCGgc--GGCCGACGGCGg -5'
26071 3' -64.6 NC_005342.2 + 14150 0.75 0.058545
Target:  5'- aUGCCGGGCCGCuCGuCCGGgUGCgGCa -3'
miRNA:   3'- gGCGGCUUGGCG-GC-GGCCgACGgCGg -5'
26071 3' -64.6 NC_005342.2 + 9589 0.74 0.074724
Target:  5'- uCgGCCGGuugcgcACCgGCUGCCGGCgGCgCGCCu -3'
miRNA:   3'- -GgCGGCU------UGG-CGGCGGCCGaCG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 25294 0.75 0.06016
Target:  5'- gUCGCaacCGGGCCGaCGCCGGCgacgGCCGCg -3'
miRNA:   3'- -GGCG---GCUUGGCgGCGGCCGa---CGGCGg -5'
26071 3' -64.6 NC_005342.2 + 12424 0.76 0.056972
Target:  5'- aCCGUCGAuAUCGUCGUCGGCcgGCaCGCCc -3'
miRNA:   3'- -GGCGGCU-UGGCGGCGGCCGa-CG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 29680 0.84 0.013168
Target:  5'- gUGCCGAG-CGCgGCCGcGCUGCCGCCa -3'
miRNA:   3'- gGCGGCUUgGCGgCGGC-CGACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 16555 0.75 0.063521
Target:  5'- aUGCCGGACaacuCGUCGCCcGCUGCUGCUg -3'
miRNA:   3'- gGCGGCUUG----GCGGCGGcCGACGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 9449 0.82 0.019443
Target:  5'- gCGCCGcACCGCCGCCGaGCUGCUcgaGCUu -3'
miRNA:   3'- gGCGGCuUGGCGGCGGC-CGACGG---CGG- -5'
26071 3' -64.6 NC_005342.2 + 26642 0.76 0.053948
Target:  5'- aCCGCCGcucgugagcguGAUCG-CGCCGGCUGCCGa- -3'
miRNA:   3'- -GGCGGC-----------UUGGCgGCGGCCGACGGCgg -5'
26071 3' -64.6 NC_005342.2 + 3175 0.74 0.074724
Target:  5'- gCCGgUGAGCCGgC-CCGGCgcGCCGCCc -3'
miRNA:   3'- -GGCgGCUUGGCgGcGGCCGa-CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 30857 0.74 0.078863
Target:  5'- cCCGgCGAACgCGUCGCCgccugccuuGGCgucGCCGCCc -3'
miRNA:   3'- -GGCgGCUUG-GCGGCGG---------CCGa--CGGCGG- -5'
26071 3' -64.6 NC_005342.2 + 20739 0.8 0.02496
Target:  5'- gCUGCCGGACauCGCCGaCgCGGCUGCgCGCCu -3'
miRNA:   3'- -GGCGGCUUG--GCGGC-G-GCCGACG-GCGG- -5'
26071 3' -64.6 NC_005342.2 + 37874 0.78 0.037774
Target:  5'- gCCGCCGAucuugGCaCGCCGCUcGCaaugGCCGCCg -3'
miRNA:   3'- -GGCGGCU-----UG-GCGGCGGcCGa---CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.