Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26072 | 5' | -53.3 | NC_005342.2 | + | 29483 | 0.66 | 0.811333 |
Target: 5'- gGAUGcCGuUGACGAgcUGGCgcGGGUcaUUCGCu -3' miRNA: 3'- -CUACaGC-ACUGCU--GCCG--CCCA--AAGUG- -5' |
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26072 | 5' | -53.3 | NC_005342.2 | + | 25473 | 0.67 | 0.750593 |
Target: 5'- --cGUCGcGGCGACuGcCGGGUUgCGCg -3' miRNA: 3'- cuaCAGCaCUGCUGcC-GCCCAAaGUG- -5' |
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26072 | 5' | -53.3 | NC_005342.2 | + | 24746 | 0.7 | 0.5296 |
Target: 5'- cGUGaUCaaGACGGCGGCGGGUacggguaUCACg -3' miRNA: 3'- cUAC-AGcaCUGCUGCCGCCCAa------AGUG- -5' |
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26072 | 5' | -53.3 | NC_005342.2 | + | 8268 | 0.73 | 0.37943 |
Target: 5'- uGAUGUagGUaGGCGGCGcGCGGGgcUCGCg -3' miRNA: 3'- -CUACAg-CA-CUGCUGC-CGCCCaaAGUG- -5' |
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26072 | 5' | -53.3 | NC_005342.2 | + | 41397 | 0.74 | 0.344448 |
Target: 5'- --cGcCGUGGCGGCGauGCGGGcUUUCGCg -3' miRNA: 3'- cuaCaGCACUGCUGC--CGCCC-AAAGUG- -5' |
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26072 | 5' | -53.3 | NC_005342.2 | + | 25387 | 1.09 | 0.001401 |
Target: 5'- cGAUGUCGUGACGACGGCGGGUUUCACc -3' miRNA: 3'- -CUACAGCACUGCUGCCGCCCAAAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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