miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26073 5' -55.6 NC_005342.2 + 44771 0.66 0.718899
Target:  5'- gGGGCgGGCGGCGCGcCGGGCcggcucaccgGCCUc- -3'
miRNA:   3'- gCUCG-CUGUCGCGCuGCUUG----------UGGAcc -5'
26073 5' -55.6 NC_005342.2 + 37141 0.66 0.718899
Target:  5'- -cGGCGugcacguguacuGCGGCGUGACGAacgGCGCCg-- -3'
miRNA:   3'- gcUCGC------------UGUCGCGCUGCU---UGUGGacc -5'
26073 5' -55.6 NC_005342.2 + 38831 0.66 0.718899
Target:  5'- aCGAcGCuGACAuGCGCGACG-GCAUC-GGc -3'
miRNA:   3'- -GCU-CG-CUGU-CGCGCUGCuUGUGGaCC- -5'
26073 5' -55.6 NC_005342.2 + 42665 0.66 0.718899
Target:  5'- aGcGCGAaGGCGCGAaagaccCGAACGCCg-- -3'
miRNA:   3'- gCuCGCUgUCGCGCU------GCUUGUGGacc -5'
26073 5' -55.6 NC_005342.2 + 45900 0.66 0.708244
Target:  5'- uGGGCGACcagggcugGGCGCGuCucGCGCC-GGa -3'
miRNA:   3'- gCUCGCUG--------UCGCGCuGcuUGUGGaCC- -5'
26073 5' -55.6 NC_005342.2 + 606 0.66 0.708244
Target:  5'- -cGGCGAC-GCGCagcugaAUGAACGCCUGcGg -3'
miRNA:   3'- gcUCGCUGuCGCGc-----UGCUUGUGGAC-C- -5'
26073 5' -55.6 NC_005342.2 + 11025 0.66 0.708244
Target:  5'- gCGGGCcACAGCgucGCGGCGGaacucgGCACC-GGc -3'
miRNA:   3'- -GCUCGcUGUCG---CGCUGCU------UGUGGaCC- -5'
26073 5' -55.6 NC_005342.2 + 26259 0.66 0.708244
Target:  5'- aCGuGCGcauAgAGCGCGuCGAGCugCUcGGc -3'
miRNA:   3'- -GCuCGC---UgUCGCGCuGCUUGugGA-CC- -5'
26073 5' -55.6 NC_005342.2 + 33597 0.66 0.697515
Target:  5'- -uGGCGACcGCGCaGGCGAuCGCCg-- -3'
miRNA:   3'- gcUCGCUGuCGCG-CUGCUuGUGGacc -5'
26073 5' -55.6 NC_005342.2 + 45398 0.66 0.696439
Target:  5'- cCGAGCGGgcGCGCGAucagcuaccacaaCGcACGCCUGc -3'
miRNA:   3'- -GCUCGCUguCGCGCU-------------GCuUGUGGACc -5'
26073 5' -55.6 NC_005342.2 + 11934 0.66 0.686724
Target:  5'- uCGAGCGccuugcacGCAGCGuCGACGAucGCgGCCg-- -3'
miRNA:   3'- -GCUCGC--------UGUCGC-GCUGCU--UG-UGGacc -5'
26073 5' -55.6 NC_005342.2 + 9721 0.66 0.686724
Target:  5'- uGAGCGcCGgauGCGCGcccgucgucaACGAGCGCCacaUGGu -3'
miRNA:   3'- gCUCGCuGU---CGCGC----------UGCUUGUGG---ACC- -5'
26073 5' -55.6 NC_005342.2 + 30351 0.66 0.686724
Target:  5'- aGcGCGGCaaGGCGCGGCGuGCGCUg-- -3'
miRNA:   3'- gCuCGCUG--UCGCGCUGCuUGUGGacc -5'
26073 5' -55.6 NC_005342.2 + 28460 0.66 0.686724
Target:  5'- aCGAGCGccgcCAGCGCG-CcAGCGCCg-- -3'
miRNA:   3'- -GCUCGCu---GUCGCGCuGcUUGUGGacc -5'
26073 5' -55.6 NC_005342.2 + 47715 0.66 0.675882
Target:  5'- cCGuGCucGGCGGCGUGACGAccACAUCgaacGGc -3'
miRNA:   3'- -GCuCG--CUGUCGCGCUGCU--UGUGGa---CC- -5'
26073 5' -55.6 NC_005342.2 + 22175 0.66 0.675882
Target:  5'- -cGGCGGCAGCcgGCGGCGGuucgGCGgCUGcGg -3'
miRNA:   3'- gcUCGCUGUCG--CGCUGCU----UGUgGAC-C- -5'
26073 5' -55.6 NC_005342.2 + 20753 0.66 0.675882
Target:  5'- cCGAcGCGGCuGCGCGccugaacguCGAcACGCCUGc -3'
miRNA:   3'- -GCU-CGCUGuCGCGCu--------GCU-UGUGGACc -5'
26073 5' -55.6 NC_005342.2 + 15457 0.66 0.674795
Target:  5'- cCGAGCGcaACAGggcugcuCGCGGCGGuCACCggcGGc -3'
miRNA:   3'- -GCUCGC--UGUC-------GCGCUGCUuGUGGa--CC- -5'
26073 5' -55.6 NC_005342.2 + 659 0.66 0.669355
Target:  5'- cCGuGCucgGugAGCGCGaucgugccgccgcccGCGAGCGCCgUGGc -3'
miRNA:   3'- -GCuCG---CugUCGCGC---------------UGCUUGUGG-ACC- -5'
26073 5' -55.6 NC_005342.2 + 44301 0.66 0.664998
Target:  5'- aCGAcGCGACGGCucagaccgucGCGAaCGAgcugcACACCgGGu -3'
miRNA:   3'- -GCU-CGCUGUCG----------CGCU-GCU-----UGUGGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.