miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26074 3' -54.5 NC_005342.2 + 27179 0.66 0.750496
Target:  5'- gGCUUggaGCGCaGG-CGUGUCGACgUucaGGCg -3'
miRNA:   3'- -CGAA---UGUGaCCaGCACGGCUGgA---CCG- -5'
26074 3' -54.5 NC_005342.2 + 21165 0.66 0.750496
Target:  5'- cGCUUcGCGCUGc-CGcagGCCGGCCUgcucggGGCa -3'
miRNA:   3'- -CGAA-UGUGACcaGCa--CGGCUGGA------CCG- -5'
26074 3' -54.5 NC_005342.2 + 15286 0.66 0.750496
Target:  5'- cGCUUGCcgucgaGCaGGUCGUcgaugaacuuGUCGAUCUcGGCg -3'
miRNA:   3'- -CGAAUG------UGaCCAGCA----------CGGCUGGA-CCG- -5'
26074 3' -54.5 NC_005342.2 + 17732 0.66 0.739954
Target:  5'- aGCUggccgGCAgcCUGGUCG-GCCGcacGCUcgGGCu -3'
miRNA:   3'- -CGAa----UGU--GACCAGCaCGGC---UGGa-CCG- -5'
26074 3' -54.5 NC_005342.2 + 1095 0.66 0.7293
Target:  5'- ---cGCGCgaaGUCgGUGCCGugCUGcGCg -3'
miRNA:   3'- cgaaUGUGac-CAG-CACGGCugGAC-CG- -5'
26074 3' -54.5 NC_005342.2 + 9333 0.66 0.718548
Target:  5'- uGCUUG--UUGGcCGUGCCGAUCaGcGCg -3'
miRNA:   3'- -CGAAUguGACCaGCACGGCUGGaC-CG- -5'
26074 3' -54.5 NC_005342.2 + 12055 0.67 0.685811
Target:  5'- gGCUUGCGCccaaucUCGUGCuCGugCaGGCg -3'
miRNA:   3'- -CGAAUGUGacc---AGCACG-GCugGaCCG- -5'
26074 3' -54.5 NC_005342.2 + 37394 0.67 0.663705
Target:  5'- ----cCGCUcGUCG-GCCGGCCcGGCg -3'
miRNA:   3'- cgaauGUGAcCAGCaCGGCUGGaCCG- -5'
26074 3' -54.5 NC_005342.2 + 45205 0.68 0.630345
Target:  5'- cGCUU-CAC-GGUCGUGacgaacgCGACC-GGCa -3'
miRNA:   3'- -CGAAuGUGaCCAGCACg------GCUGGaCCG- -5'
26074 3' -54.5 NC_005342.2 + 45619 0.68 0.629232
Target:  5'- ---gGCGCUGcUCGaggugcuUGCCGAgCUGGCc -3'
miRNA:   3'- cgaaUGUGACcAGC-------ACGGCUgGACCG- -5'
26074 3' -54.5 NC_005342.2 + 47808 0.68 0.619215
Target:  5'- uGCUcaUGCGCgauGUCGUgcugcucgguGCCGACgaGGCg -3'
miRNA:   3'- -CGA--AUGUGac-CAGCA----------CGGCUGgaCCG- -5'
26074 3' -54.5 NC_005342.2 + 14342 0.68 0.619215
Target:  5'- uGCUUGCGCUucaGGUCG-GCgaucGCCUGcGCg -3'
miRNA:   3'- -CGAAUGUGA---CCAGCaCGgc--UGGAC-CG- -5'
26074 3' -54.5 NC_005342.2 + 17624 0.68 0.596998
Target:  5'- cGCUgcUGCACgaccUGG-CGU-CCGGCCUGGg -3'
miRNA:   3'- -CGA--AUGUG----ACCaGCAcGGCUGGACCg -5'
26074 3' -54.5 NC_005342.2 + 35585 0.68 0.585931
Target:  5'- gGCggcgACACUGG-CGcGCCGGgCggGGCg -3'
miRNA:   3'- -CGaa--UGUGACCaGCaCGGCUgGa-CCG- -5'
26074 3' -54.5 NC_005342.2 + 3401 0.69 0.563924
Target:  5'- aGCUgcgGCGC-GGUCGccaccugGuuGACCUGcGCg -3'
miRNA:   3'- -CGAa--UGUGaCCAGCa------CggCUGGAC-CG- -5'
26074 3' -54.5 NC_005342.2 + 20325 0.69 0.553001
Target:  5'- gGCUUGC-C-GGcCGUGCCGACg-GGUa -3'
miRNA:   3'- -CGAAUGuGaCCaGCACGGCUGgaCCG- -5'
26074 3' -54.5 NC_005342.2 + 17903 0.69 0.542142
Target:  5'- aGCUgucCGCcGGUgCG-GCCGcgcGCCUGGCg -3'
miRNA:   3'- -CGAau-GUGaCCA-GCaCGGC---UGGACCG- -5'
26074 3' -54.5 NC_005342.2 + 2841 0.69 0.531355
Target:  5'- --gUGC-CaGGUCugcggccuUGCCGACCUGGCg -3'
miRNA:   3'- cgaAUGuGaCCAGc-------ACGGCUGGACCG- -5'
26074 3' -54.5 NC_005342.2 + 39397 0.69 0.520646
Target:  5'- cGCUU-C-CUGGUCG-GCCuGCCUGcGCc -3'
miRNA:   3'- -CGAAuGuGACCAGCaCGGcUGGAC-CG- -5'
26074 3' -54.5 NC_005342.2 + 25410 0.7 0.489058
Target:  5'- cGCUUGCAgUGuGcCGgcgguaGCCGucacGCCUGGCg -3'
miRNA:   3'- -CGAAUGUgAC-CaGCa-----CGGC----UGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.