miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26074 5' -55.4 NC_005342.2 + 19451 0.66 0.731226
Target:  5'- -cGUgAUGGGCAGCcgcgccgccGCGACCcGCGCGg -3'
miRNA:   3'- gcCAgUGCUUGUUG---------UGCUGGcCGCGC- -5'
26074 5' -55.4 NC_005342.2 + 29667 0.66 0.731226
Target:  5'- ---gCGCGAGaAGCGCGuGCCGaGCGCGg -3'
miRNA:   3'- gccaGUGCUUgUUGUGC-UGGC-CGCGC- -5'
26074 5' -55.4 NC_005342.2 + 17280 0.66 0.731226
Target:  5'- gGaGUCGCGccuGACGGC-CG-CCGGCGUa -3'
miRNA:   3'- gC-CAGUGC---UUGUUGuGCuGGCCGCGc -5'
26074 5' -55.4 NC_005342.2 + 33574 0.66 0.731226
Target:  5'- gCGG-CGCGAGaaacucgccuuCAugGCGACC-GCGCa -3'
miRNA:   3'- -GCCaGUGCUU-----------GUugUGCUGGcCGCGc -5'
26074 5' -55.4 NC_005342.2 + 10232 0.66 0.730176
Target:  5'- gGGUCGgcgcacuggaagcCGAGCGACGCGGgCaGUGCu -3'
miRNA:   3'- gCCAGU-------------GCUUGUUGUGCUgGcCGCGc -5'
26074 5' -55.4 NC_005342.2 + 11789 0.66 0.72068
Target:  5'- ---aCGCGGccauCAGCGCGA-CGGCGCGc -3'
miRNA:   3'- gccaGUGCUu---GUUGUGCUgGCCGCGC- -5'
26074 5' -55.4 NC_005342.2 + 47796 0.66 0.72068
Target:  5'- gCGGgcgCACGGGCAGuggacuCGCG-CCaGGCGCc -3'
miRNA:   3'- -GCCa--GUGCUUGUU------GUGCuGG-CCGCGc -5'
26074 5' -55.4 NC_005342.2 + 1507 0.66 0.72068
Target:  5'- uCGGUCAguucggugaucgUGAACuGguCGACCGGCaGCu -3'
miRNA:   3'- -GCCAGU------------GCUUGuUguGCUGGCCG-CGc -5'
26074 5' -55.4 NC_005342.2 + 46692 0.66 0.710046
Target:  5'- cCGaUCGCGuaacGCAACGCGcGCCaggcGGCGCGc -3'
miRNA:   3'- -GCcAGUGCu---UGUUGUGC-UGG----CCGCGC- -5'
26074 5' -55.4 NC_005342.2 + 28400 0.66 0.710046
Target:  5'- uGuGcCGCGccGACcgUGCGACCGGCGCc -3'
miRNA:   3'- gC-CaGUGC--UUGuuGUGCUGGCCGCGc -5'
26074 5' -55.4 NC_005342.2 + 13630 0.66 0.710046
Target:  5'- uCGGgcagcugCGCGAGCAGCACGAgCGuaGg- -3'
miRNA:   3'- -GCCa------GUGCUUGUUGUGCUgGCcgCgc -5'
26074 5' -55.4 NC_005342.2 + 28731 0.66 0.710046
Target:  5'- uGcGUCGCGugcggcCAGCACGAUgaCGaGCGCGa -3'
miRNA:   3'- gC-CAGUGCuu----GUUGUGCUG--GC-CGCGC- -5'
26074 5' -55.4 NC_005342.2 + 36892 0.66 0.699336
Target:  5'- gCGGcgaCACGccgcucACGACGCGcGCCGGUGCc -3'
miRNA:   3'- -GCCa--GUGCu-----UGUUGUGC-UGGCCGCGc -5'
26074 5' -55.4 NC_005342.2 + 22921 0.66 0.699336
Target:  5'- aCGGcgCgACGAACuACcCGAuuCCGGCGCa -3'
miRNA:   3'- -GCCa-G-UGCUUGuUGuGCU--GGCCGCGc -5'
26074 5' -55.4 NC_005342.2 + 28876 0.66 0.699336
Target:  5'- aCGGUCacACGGGCcGCGcCGAgUGGCGaCGu -3'
miRNA:   3'- -GCCAG--UGCUUGuUGU-GCUgGCCGC-GC- -5'
26074 5' -55.4 NC_005342.2 + 39924 0.66 0.699336
Target:  5'- uGGcacgcugUACGAagugcGCGACGCGGCCGGC-Ca -3'
miRNA:   3'- gCCa------GUGCU-----UGUUGUGCUGGCCGcGc -5'
26074 5' -55.4 NC_005342.2 + 20873 0.66 0.688563
Target:  5'- aGG-UAUGGGCGGCGacaaGcCCGGCGCa -3'
miRNA:   3'- gCCaGUGCUUGUUGUg---CuGGCCGCGc -5'
26074 5' -55.4 NC_005342.2 + 19923 0.66 0.688563
Target:  5'- cCGaUCACGAGCGAUACGAUCaGCa-- -3'
miRNA:   3'- -GCcAGUGCUUGUUGUGCUGGcCGcgc -5'
26074 5' -55.4 NC_005342.2 + 30424 0.66 0.688563
Target:  5'- uCGGgaaugugCGCGAucgcuucggACAGUGCGACCGGCuGCa -3'
miRNA:   3'- -GCCa------GUGCU---------UGUUGUGCUGGCCG-CGc -5'
26074 5' -55.4 NC_005342.2 + 44979 0.66 0.688563
Target:  5'- -cGUCGCGGcgGACGCG-CCGGCGa- -3'
miRNA:   3'- gcCAGUGCUugUUGUGCuGGCCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.