miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26077 3' -46.9 NC_005342.2 + 13079 0.66 0.987363
Target:  5'- cUGCcgGCGAUGGcGGUGCGauguuuuaccggccuUCAaACGCg -3'
miRNA:   3'- -AUGuaUGCUACCuUCGUGU---------------AGU-UGCG- -5'
26077 3' -46.9 NC_005342.2 + 27873 0.66 0.986633
Target:  5'- cUGCGUuCGAguacGGcGGCAucacuucggcCAUCAGCGCg -3'
miRNA:   3'- -AUGUAuGCUa---CCuUCGU----------GUAGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 19483 0.66 0.986633
Target:  5'- -cUAUGCGAUcGGcgcuGGCGCGcuggCGGCGCu -3'
miRNA:   3'- auGUAUGCUA-CCu---UCGUGUa---GUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 40465 0.66 0.986633
Target:  5'- ----cGCGAUGcugaucGAGCGCAUC-GCGCa -3'
miRNA:   3'- auguaUGCUACc-----UUCGUGUAGuUGCG- -5'
26077 3' -46.9 NC_005342.2 + 39539 0.66 0.986633
Target:  5'- gACG--UGGUGGccGGGCAgAUCAACGUc -3'
miRNA:   3'- aUGUauGCUACC--UUCGUgUAGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 36729 0.66 0.986633
Target:  5'- cUGCAUugGGccgucUGGcAGCAC-UCgAGCGCc -3'
miRNA:   3'- -AUGUAugCU-----ACCuUCGUGuAG-UUGCG- -5'
26077 3' -46.9 NC_005342.2 + 14819 0.66 0.984666
Target:  5'- gGCGUGcCGAUcagaaugacgccGGAgagcugcugcaGGCGCGUCAGCaGCa -3'
miRNA:   3'- aUGUAU-GCUA------------CCU-----------UCGUGUAGUUG-CG- -5'
26077 3' -46.9 NC_005342.2 + 7336 0.66 0.984666
Target:  5'- gUGCAUGCGAUcuuucauGCGCAagcCGGCGCa -3'
miRNA:   3'- -AUGUAUGCUAccuu---CGUGUa--GUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 43064 0.66 0.982486
Target:  5'- cGCGauguuUugGAUGGcgacGGCGCAcuaucgCAGCGCg -3'
miRNA:   3'- aUGU-----AugCUACCu---UCGUGUa-----GUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 36126 0.66 0.982486
Target:  5'- aUGCGUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 19546 0.66 0.98008
Target:  5'- gAUggGCGccGGucGCACGgUCGGCGCg -3'
miRNA:   3'- aUGuaUGCuaCCuuCGUGU-AGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 27499 0.66 0.977437
Target:  5'- uUGCGUGCGGUuGAuguaAGCG-AUCGACGUg -3'
miRNA:   3'- -AUGUAUGCUAcCU----UCGUgUAGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 21201 0.66 0.977437
Target:  5'- uUACGUGCGcaucaAUGGGcGGC-CGUCGcGCGCa -3'
miRNA:   3'- -AUGUAUGC-----UACCU-UCGuGUAGU-UGCG- -5'
26077 3' -46.9 NC_005342.2 + 42397 0.66 0.977437
Target:  5'- cGCAUGCccGAUGGccGCACAaUCGA-GCu -3'
miRNA:   3'- aUGUAUG--CUACCuuCGUGU-AGUUgCG- -5'
26077 3' -46.9 NC_005342.2 + 41230 0.67 0.974543
Target:  5'- gGCGcGCGAccGggGCGCcgUGGCGCu -3'
miRNA:   3'- aUGUaUGCUacCuuCGUGuaGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 17379 0.67 0.974543
Target:  5'- gACGUcCGA-GGAgaaccgccaGGCGC-UCGACGCg -3'
miRNA:   3'- aUGUAuGCUaCCU---------UCGUGuAGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 15472 0.67 0.974543
Target:  5'- cUGCucgcgGCGGUcaccGGcGGCGCGUCAaGCGCg -3'
miRNA:   3'- -AUGua---UGCUA----CCuUCGUGUAGU-UGCG- -5'
26077 3' -46.9 NC_005342.2 + 47728 0.67 0.971389
Target:  5'- cAUcgGCGGUGuGcGGCugugcuACAUCGGCGCg -3'
miRNA:   3'- aUGuaUGCUAC-CuUCG------UGUAGUUGCG- -5'
26077 3' -46.9 NC_005342.2 + 17118 0.67 0.971389
Target:  5'- cGCAUGCGcgaGGAAgucguGCGCGUCGAUaugGCg -3'
miRNA:   3'- aUGUAUGCua-CCUU-----CGUGUAGUUG---CG- -5'
26077 3' -46.9 NC_005342.2 + 16021 0.67 0.971389
Target:  5'- aUGCAUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.