miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26077 5' -44.7 NC_005342.2 + 36316 0.65 0.999093
Target:  5'- aCGAAAUGAAGcgccugcGCGacuacuggcagcgcUACUucgacacguUCGCGCGCg -3'
miRNA:   3'- -GCUUUACUUU-------UGC--------------AUGGu--------AGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 11583 0.66 0.998962
Target:  5'- ----cUGAAAcGCGccgGCCGucacuUCGCGCGCg -3'
miRNA:   3'- gcuuuACUUU-UGCa--UGGU-----AGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 31332 0.66 0.998962
Target:  5'- cCGGGcaGGucgaaGUGCUGUCGCACGUa -3'
miRNA:   3'- -GCUUuaCUuuug-CAUGGUAGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 15280 0.66 0.998962
Target:  5'- cCGAAGUcGcAAAGC-UGCCcgacgCGCACGCc -3'
miRNA:   3'- -GCUUUA-C-UUUUGcAUGGua---GCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 33155 0.66 0.998962
Target:  5'- aCGccGUGGucuGCGaaugACCugcUCGCGCGCg -3'
miRNA:   3'- -GCuuUACUuu-UGCa---UGGu--AGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 33989 0.66 0.998962
Target:  5'- aCGAAAcGcaaaGAAGCGcACuCAgcUCGCGCGCa -3'
miRNA:   3'- -GCUUUaC----UUUUGCaUG-GU--AGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 26151 0.66 0.998709
Target:  5'- aGGAAUGccucGAACGcuuucagcUGCCAcUCGCGCGg -3'
miRNA:   3'- gCUUUACu---UUUGC--------AUGGU-AGCGUGCg -5'
26077 5' -44.7 NC_005342.2 + 13718 0.66 0.998709
Target:  5'- uGAAGUcGAGcGCGUAggaCGcCGCGCGCc -3'
miRNA:   3'- gCUUUA-CUUuUGCAUg--GUaGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 17994 0.66 0.998709
Target:  5'- ---uAUGucauGAACGcGCUgAUCGCGCGCg -3'
miRNA:   3'- gcuuUACu---UUUGCaUGG-UAGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 16035 0.66 0.998406
Target:  5'- -----cGgcGACGUGCuCAUCGCGCu- -3'
miRNA:   3'- gcuuuaCuuUUGCAUG-GUAGCGUGcg -5'
26077 5' -44.7 NC_005342.2 + 5563 0.66 0.998406
Target:  5'- cCGgcGUGGAGACGaucggcGCUGUUGCGgGCu -3'
miRNA:   3'- -GCuuUACUUUUGCa-----UGGUAGCGUgCG- -5'
26077 5' -44.7 NC_005342.2 + 23137 0.66 0.998044
Target:  5'- gCGGAcUGGAcGAUGUugguGCCAUCGCcCGUc -3'
miRNA:   3'- -GCUUuACUU-UUGCA----UGGUAGCGuGCG- -5'
26077 5' -44.7 NC_005342.2 + 26362 0.67 0.997616
Target:  5'- aCGu--UGAuGACGUcgcuGCCGUCGguCGUg -3'
miRNA:   3'- -GCuuuACUuUUGCA----UGGUAGCguGCG- -5'
26077 5' -44.7 NC_005342.2 + 34704 0.67 0.997473
Target:  5'- aGAGGUGucguaucaucugcCGUACCAUUGCcgguCGCg -3'
miRNA:   3'- gCUUUACuuuu---------GCAUGGUAGCGu---GCG- -5'
26077 5' -44.7 NC_005342.2 + 29057 0.67 0.997112
Target:  5'- -----aGAGggUGUACCAgcCGCGCGg -3'
miRNA:   3'- gcuuuaCUUuuGCAUGGUa-GCGUGCg -5'
26077 5' -44.7 NC_005342.2 + 44566 0.67 0.997112
Target:  5'- gCGAGAcgcUGAAGAag-AUCGcCGCGCGCg -3'
miRNA:   3'- -GCUUU---ACUUUUgcaUGGUaGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 5713 0.67 0.996522
Target:  5'- -----cGAAcuCGUACCAguugccgucUCGCGCGUc -3'
miRNA:   3'- gcuuuaCUUuuGCAUGGU---------AGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 4284 0.67 0.996522
Target:  5'- uGAcAUGGAuACGUGCauacggUAUCGCcguGCGCa -3'
miRNA:   3'- gCUuUACUUuUGCAUG------GUAGCG---UGCG- -5'
26077 5' -44.7 NC_005342.2 + 4219 0.67 0.995838
Target:  5'- uCGgcGUGAGGAU--GCCG-CGCACGUu -3'
miRNA:   3'- -GCuuUACUUUUGcaUGGUaGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 15230 0.68 0.995046
Target:  5'- gCGAAAUGAGcGACGauuUGCCGUgcUGCggcgGCGCg -3'
miRNA:   3'- -GCUUUACUU-UUGC---AUGGUA--GCG----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.