miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26077 5' -44.7 NC_005342.2 + 42502 0.68 0.995046
Target:  5'- gGAAgcuauGUGAAGGCGUcaGCCGcuuUUGCuCGCg -3'
miRNA:   3'- gCUU-----UACUUUUGCA--UGGU---AGCGuGCG- -5'
26077 5' -44.7 NC_005342.2 + 557 0.68 0.995046
Target:  5'- gCGAGAUcGGcAAugGUGCCAUCaGUaACGUa -3'
miRNA:   3'- -GCUUUA-CU-UUugCAUGGUAG-CG-UGCG- -5'
26077 5' -44.7 NC_005342.2 + 21632 0.68 0.994137
Target:  5'- uCGAuccgGAAGGCaUGCUG-CGCGCGCa -3'
miRNA:   3'- -GCUuua-CUUUUGcAUGGUaGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 38000 0.68 0.994137
Target:  5'- aCGAGAUcGAugcacGCGcgACCGU-GCACGCg -3'
miRNA:   3'- -GCUUUA-CUuu---UGCa-UGGUAgCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 42022 0.68 0.994137
Target:  5'- cCGAGGcGuaucGCGUGCUGUUGCAgCGCg -3'
miRNA:   3'- -GCUUUaCuuu-UGCAUGGUAGCGU-GCG- -5'
26077 5' -44.7 NC_005342.2 + 18167 0.68 0.994039
Target:  5'- cCGAu-UGccGGCGUGCCGggugaugcgcucgUCGUGCGCg -3'
miRNA:   3'- -GCUuuACuuUUGCAUGGU-------------AGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 19285 0.68 0.993098
Target:  5'- uCGAccgcGUGAAcaacGCGUGCC-UCGgCGCGCc -3'
miRNA:   3'- -GCUu---UACUUu---UGCAUGGuAGC-GUGCG- -5'
26077 5' -44.7 NC_005342.2 + 8112 0.68 0.993098
Target:  5'- aCGAuccGUGGAuauagacgaAGCGUGCCAUCauGC-CGCc -3'
miRNA:   3'- -GCUu--UACUU---------UUGCAUGGUAG--CGuGCG- -5'
26077 5' -44.7 NC_005342.2 + 47596 0.68 0.993098
Target:  5'- gGAGGUGAGcAUGUGgC-UCGgCGCGCu -3'
miRNA:   3'- gCUUUACUUuUGCAUgGuAGC-GUGCG- -5'
26077 5' -44.7 NC_005342.2 + 9004 0.68 0.993098
Target:  5'- uCGggGUGcgguCG-AgCAUUGCACGCa -3'
miRNA:   3'- -GCuuUACuuuuGCaUgGUAGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 40128 0.68 0.993098
Target:  5'- gCGAGcUGGAAAUG-GCCggCGCAgGCc -3'
miRNA:   3'- -GCUUuACUUUUGCaUGGuaGCGUgCG- -5'
26077 5' -44.7 NC_005342.2 + 15858 0.68 0.992407
Target:  5'- cCGAGAaccccgacgcggcgcUGAAcguCGUGCUG-CGCACGCu -3'
miRNA:   3'- -GCUUU---------------ACUUuu-GCAUGGUaGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 10524 0.68 0.991917
Target:  5'- -------cAGACG-GCCAUCGCGCGUu -3'
miRNA:   3'- gcuuuacuUUUGCaUGGUAGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 41256 0.68 0.991917
Target:  5'- uCGAAuUGAGcACGUugCA-CGCAUGg -3'
miRNA:   3'- -GCUUuACUUuUGCAugGUaGCGUGCg -5'
26077 5' -44.7 NC_005342.2 + 1537 0.68 0.991917
Target:  5'- aCGAAGccggccGAcAGCGUGCCGUCGauaccCAUGCu -3'
miRNA:   3'- -GCUUUa-----CUuUUGCAUGGUAGC-----GUGCG- -5'
26077 5' -44.7 NC_005342.2 + 46831 0.68 0.990581
Target:  5'- gCGAucgGAuauGCaGUGCaaCGUCGCGCGCa -3'
miRNA:   3'- -GCUuuaCUuu-UG-CAUG--GUAGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 9040 0.68 0.990438
Target:  5'- aCGGGAUGc--GCGgGCCGUgcugccggugcagCGCGCGCa -3'
miRNA:   3'- -GCUUUACuuuUGCaUGGUA-------------GCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 25653 0.68 0.990438
Target:  5'- -----cGAGAGCGUcuucccgGCCGUCGCGaagGCg -3'
miRNA:   3'- gcuuuaCUUUUGCA-------UGGUAGCGUg--CG- -5'
26077 5' -44.7 NC_005342.2 + 10932 0.68 0.990438
Target:  5'- aCGAAGUGAucguuGACGaugcguucgaaccUGCCGcUGCACGUu -3'
miRNA:   3'- -GCUUUACUu----UUGC-------------AUGGUaGCGUGCG- -5'
26077 5' -44.7 NC_005342.2 + 4803 0.69 0.989077
Target:  5'- uGGAAucUGGAuaguCGgcugACCGUaCGCGCGCg -3'
miRNA:   3'- gCUUU--ACUUuu--GCa---UGGUA-GCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.