miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26079 3' -50.9 NC_005342.2 + 31870 0.66 0.899201
Target:  5'- -gGCGAcugUCGGCAgGcCGGccacgCGCUUACu -3'
miRNA:   3'- aaCGCU---AGCUGUgCaGCUa----GCGAAUG- -5'
26079 3' -50.9 NC_005342.2 + 15983 0.66 0.899201
Target:  5'- cUGCGAcgagCGAgGCuUUGAUCGgUUGCa -3'
miRNA:   3'- aACGCUa---GCUgUGcAGCUAGCgAAUG- -5'
26079 3' -50.9 NC_005342.2 + 23813 0.66 0.899201
Target:  5'- gUGCGGUC---AUGUCGAUCGCcucACg -3'
miRNA:   3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5'
26079 3' -50.9 NC_005342.2 + 3574 0.66 0.891807
Target:  5'- -gGCGAUCGuauuCGCccaGUCGggCGCcUGCg -3'
miRNA:   3'- aaCGCUAGCu---GUG---CAGCuaGCGaAUG- -5'
26079 3' -50.9 NC_005342.2 + 18148 0.66 0.891807
Target:  5'- -cGCGcAUCGACGCGuuccgUCGG-CGCUacgGCa -3'
miRNA:   3'- aaCGC-UAGCUGUGC-----AGCUaGCGAa--UG- -5'
26079 3' -50.9 NC_005342.2 + 7549 0.66 0.891807
Target:  5'- -gGCGAUCGGguUGguguucuuugCGGUCGCgagUGCg -3'
miRNA:   3'- aaCGCUAGCUguGCa---------GCUAGCGa--AUG- -5'
26079 3' -50.9 NC_005342.2 + 6878 0.66 0.891807
Target:  5'- cUUGCGGUCgGGCGCGugcUCGAgCGCcacacgUACa -3'
miRNA:   3'- -AACGCUAG-CUGUGC---AGCUaGCGa-----AUG- -5'
26079 3' -50.9 NC_005342.2 + 26215 0.66 0.884125
Target:  5'- -gGCGGUUGAgCuCGUCGAacuUCGC-UGCg -3'
miRNA:   3'- aaCGCUAGCU-GuGCAGCU---AGCGaAUG- -5'
26079 3' -50.9 NC_005342.2 + 23155 0.66 0.884125
Target:  5'- gUGCcAUCGcccguCACGUCGGUCGg-UGCg -3'
miRNA:   3'- aACGcUAGCu----GUGCAGCUAGCgaAUG- -5'
26079 3' -50.9 NC_005342.2 + 36001 0.66 0.884125
Target:  5'- -cGCGAUaCGGC-CG-CGAUCGUcgACg -3'
miRNA:   3'- aaCGCUA-GCUGuGCaGCUAGCGaaUG- -5'
26079 3' -50.9 NC_005342.2 + 4333 0.66 0.884125
Target:  5'- gUGCGcuaCGugGCGuUUGGUCGCgcagUGCg -3'
miRNA:   3'- aACGCua-GCugUGC-AGCUAGCGa---AUG- -5'
26079 3' -50.9 NC_005342.2 + 17679 0.66 0.884125
Target:  5'- -cGCGGuguUCGGCugGcagaCGAUCGCgaagGCg -3'
miRNA:   3'- aaCGCU---AGCUGugCa---GCUAGCGaa--UG- -5'
26079 3' -50.9 NC_005342.2 + 15109 0.66 0.876158
Target:  5'- --aUGAUCGACuugGCGUCGGUUGagUUGCg -3'
miRNA:   3'- aacGCUAGCUG---UGCAGCUAGCg-AAUG- -5'
26079 3' -50.9 NC_005342.2 + 4698 0.66 0.875346
Target:  5'- aUGCGAUCaGGCGCGgucaucgUCGAgauacgccagaaUCGCUUugGCg -3'
miRNA:   3'- aACGCUAG-CUGUGC-------AGCU------------AGCGAA--UG- -5'
26079 3' -50.9 NC_005342.2 + 15255 0.66 0.871246
Target:  5'- cUGCGG-CGGCGCGgucagcaucagcacCGggCGCUUGCc -3'
miRNA:   3'- aACGCUaGCUGUGCa-------------GCuaGCGAAUG- -5'
26079 3' -50.9 NC_005342.2 + 8134 0.66 0.867916
Target:  5'- -gGCGAcaggUCGGcCGCGUCcAUCGCgUACu -3'
miRNA:   3'- aaCGCU----AGCU-GUGCAGcUAGCGaAUG- -5'
26079 3' -50.9 NC_005342.2 + 12630 0.66 0.867916
Target:  5'- aUUGCcauuuGAUCGACGgGUCGAcCGCg--- -3'
miRNA:   3'- -AACG-----CUAGCUGUgCAGCUaGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 31636 0.66 0.867916
Target:  5'- cUUGaCGAgUGugACGUCGAUCGacgACg -3'
miRNA:   3'- -AAC-GCUaGCugUGCAGCUAGCgaaUG- -5'
26079 3' -50.9 NC_005342.2 + 29943 0.67 0.850632
Target:  5'- --uCGAUCGACGCGcCGcgCGCg--- -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 30645 0.67 0.841609
Target:  5'- -cGCGAUCagaucauccucgGGCAUGUCGAggaCGC-UGCg -3'
miRNA:   3'- aaCGCUAG------------CUGUGCAGCUa--GCGaAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.