miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26079 3' -50.9 NC_005342.2 + 20438 1.08 0.002475
Target:  5'- cUUGCGAUCGACACGUCGAUCGCUUACa -3'
miRNA:   3'- -AACGCUAGCUGUGCAGCUAGCGAAUG- -5'
26079 3' -50.9 NC_005342.2 + 27517 0.84 0.10713
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
26079 3' -50.9 NC_005342.2 + 18014 0.78 0.251809
Target:  5'- -cGCGcgCGGCGCGUCGAUCGaucagGCg -3'
miRNA:   3'- aaCGCuaGCUGUGCAGCUAGCgaa--UG- -5'
26079 3' -50.9 NC_005342.2 + 9165 0.76 0.362274
Target:  5'- -cGCGA-CGGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- aaCGCUaGCUGU-GCAGCUAGCGa-AUG- -5'
26079 3' -50.9 NC_005342.2 + 18421 0.74 0.438985
Target:  5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3'
miRNA:   3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5'
26079 3' -50.9 NC_005342.2 + 32735 0.73 0.524164
Target:  5'- -cGgGAUCG--GCGUCGAUCGCUUugaGCg -3'
miRNA:   3'- aaCgCUAGCugUGCAGCUAGCGAA---UG- -5'
26079 3' -50.9 NC_005342.2 + 35320 0.72 0.546479
Target:  5'- -cGCGGUCGACcCGUCGAUCa----- -3'
miRNA:   3'- aaCGCUAGCUGuGCAGCUAGcgaaug -5'
26079 3' -50.9 NC_005342.2 + 38986 0.72 0.557751
Target:  5'- -cGCGAaCGcCGCGUCGGUCGCc--- -3'
miRNA:   3'- aaCGCUaGCuGUGCAGCUAGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 19485 0.71 0.603402
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
26079 3' -50.9 NC_005342.2 + 29533 0.71 0.603402
Target:  5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3'
miRNA:   3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5'
26079 3' -50.9 NC_005342.2 + 22867 0.71 0.614907
Target:  5'- -gGCGAUCGGCGCGaUCGuacuggCGCUcgugACg -3'
miRNA:   3'- aaCGCUAGCUGUGC-AGCua----GCGAa---UG- -5'
26079 3' -50.9 NC_005342.2 + 2509 0.71 0.614907
Target:  5'- -cGCGAUCGGCACGUUcg-CGCcggGCu -3'
miRNA:   3'- aaCGCUAGCUGUGCAGcuaGCGaa-UG- -5'
26079 3' -50.9 NC_005342.2 + 9021 0.71 0.637955
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5'
26079 3' -50.9 NC_005342.2 + 29541 0.71 0.637955
Target:  5'- -gGCGAUCGGCGCGccgcCGGUCGaCUg-- -3'
miRNA:   3'- aaCGCUAGCUGUGCa---GCUAGC-GAaug -5'
26079 3' -50.9 NC_005342.2 + 44631 0.71 0.637955
Target:  5'- cUGCGucUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 15762 0.71 0.637955
Target:  5'- -cGUGAUCGAUcucgaaGCGuUCGAUCGCgccgACg -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaa--UG- -5'
26079 3' -50.9 NC_005342.2 + 38792 0.7 0.672455
Target:  5'- -cGCGAUCGACACuGcCG-UCGCgaACg -3'
miRNA:   3'- aaCGCUAGCUGUG-CaGCuAGCGaaUG- -5'
26079 3' -50.9 NC_005342.2 + 20553 0.7 0.695266
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 2463 0.69 0.717809
Target:  5'- gUGaCGAUCGACGCcgccucgagGUCGggCGCgacgUACa -3'
miRNA:   3'- aAC-GCUAGCUGUG---------CAGCuaGCGa---AUG- -5'
26079 3' -50.9 NC_005342.2 + 43125 0.69 0.728947
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.