miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26079 3' -50.9 NC_005342.2 + 27517 0.84 0.10713
Target:  5'- -aGCGAUCGACGUGUCGAUCGCaagUGCc -3'
miRNA:   3'- aaCGCUAGCUGUGCAGCUAGCGa--AUG- -5'
26079 3' -50.9 NC_005342.2 + 29943 0.67 0.850632
Target:  5'- --uCGAUCGACGCGcCGcgCGCg--- -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 31636 0.66 0.867916
Target:  5'- cUUGaCGAgUGugACGUCGAUCGacgACg -3'
miRNA:   3'- -AAC-GCUaGCugUGCAGCUAGCgaaUG- -5'
26079 3' -50.9 NC_005342.2 + 23813 0.66 0.899201
Target:  5'- gUGCGGUC---AUGUCGAUCGCcucACg -3'
miRNA:   3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5'
26079 3' -50.9 NC_005342.2 + 19485 0.71 0.603402
Target:  5'- aUGCGAUCGGCGC-UgGcgCGCUgGCg -3'
miRNA:   3'- aACGCUAGCUGUGcAgCuaGCGAaUG- -5'
26079 3' -50.9 NC_005342.2 + 22867 0.71 0.614907
Target:  5'- -gGCGAUCGGCGCGaUCGuacuggCGCUcgugACg -3'
miRNA:   3'- aaCGCUAGCUGUGC-AGCua----GCGAa---UG- -5'
26079 3' -50.9 NC_005342.2 + 29541 0.71 0.637955
Target:  5'- -gGCGAUCGGCGCGccgcCGGUCGaCUg-- -3'
miRNA:   3'- aaCGCUAGCUGUGCa---GCUAGC-GAaug -5'
26079 3' -50.9 NC_005342.2 + 15762 0.71 0.637955
Target:  5'- -cGUGAUCGAUcucgaaGCGuUCGAUCGCgccgACg -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaa--UG- -5'
26079 3' -50.9 NC_005342.2 + 2463 0.69 0.717809
Target:  5'- gUGaCGAUCGACGCcgccucgagGUCGggCGCgacgUACa -3'
miRNA:   3'- aAC-GCUAGCUGUG---------CAGCuaGCGa---AUG- -5'
26079 3' -50.9 NC_005342.2 + 31182 0.67 0.841609
Target:  5'- -cGCGaAUCuGCuuGUCGAUCGCUUu- -3'
miRNA:   3'- aaCGC-UAGcUGugCAGCUAGCGAAug -5'
26079 3' -50.9 NC_005342.2 + 20228 0.67 0.813133
Target:  5'- -gGCGAUCGAcCGCGacuggccuaCGAUCGCgccGCa -3'
miRNA:   3'- aaCGCUAGCU-GUGCa--------GCUAGCGaa-UG- -5'
26079 3' -50.9 NC_005342.2 + 20553 0.7 0.695266
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 9165 0.76 0.362274
Target:  5'- -cGCGA-CGGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- aaCGCUaGCUGU-GCAGCUAGCGa-AUG- -5'
26079 3' -50.9 NC_005342.2 + 40654 0.67 0.822849
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
26079 3' -50.9 NC_005342.2 + 18421 0.74 0.438985
Target:  5'- -cGCGAUCGGCgGCGUCGAcacCGCgaGCg -3'
miRNA:   3'- aaCGCUAGCUG-UGCAGCUa--GCGaaUG- -5'
26079 3' -50.9 NC_005342.2 + 44631 0.71 0.637955
Target:  5'- cUGCGucUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
26079 3' -50.9 NC_005342.2 + 14068 0.67 0.832345
Target:  5'- -cGCGAUCGuCAuacCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
26079 3' -50.9 NC_005342.2 + 8134 0.66 0.867916
Target:  5'- -gGCGAcaggUCGGcCGCGUCcAUCGCgUACu -3'
miRNA:   3'- aaCGCU----AGCU-GUGCAGcUAGCGaAUG- -5'
26079 3' -50.9 NC_005342.2 + 32735 0.73 0.524164
Target:  5'- -cGgGAUCG--GCGUCGAUCGCUUugaGCg -3'
miRNA:   3'- aaCgCUAGCugUGCAGCUAGCGAA---UG- -5'
26079 3' -50.9 NC_005342.2 + 9021 0.71 0.637955
Target:  5'- -gGCGAccugCGACACGUCGA-CGCcgaucUGCg -3'
miRNA:   3'- aaCGCUa---GCUGUGCAGCUaGCGa----AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.