miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26079 5' -54.8 NC_005342.2 + 19775 0.66 0.727507
Target:  5'- aACGCAcgGGAUCGUGccGCGcGUUGa--- -3'
miRNA:   3'- -UGCGUuaCCUAGCGC--CGC-CAGCaagu -5'
26079 5' -54.8 NC_005342.2 + 10085 0.66 0.727507
Target:  5'- gACGCGAUucGGAUCGaGGCccaGGUCGg--- -3'
miRNA:   3'- -UGCGUUA--CCUAGCgCCG---CCAGCaagu -5'
26079 5' -54.8 NC_005342.2 + 23641 0.66 0.726433
Target:  5'- gGCGCAuucucgGUcGGUCGCGGCuguuccaGGUCGcgCAg -3'
miRNA:   3'- -UGCGU------UAcCUAGCGCCG-------CCAGCaaGU- -5'
26079 5' -54.8 NC_005342.2 + 18005 0.66 0.705869
Target:  5'- cGCGCuGAUcGcgCGCGGCGcGUCGaUCGa -3'
miRNA:   3'- -UGCG-UUAcCuaGCGCCGC-CAGCaAGU- -5'
26079 5' -54.8 NC_005342.2 + 1118 0.66 0.683936
Target:  5'- cGCGCGAcguUGcacugcauauccGAUCGCGGCGGcUUGcUUCGg -3'
miRNA:   3'- -UGCGUU---AC------------CUAGCGCCGCC-AGC-AAGU- -5'
26079 5' -54.8 NC_005342.2 + 39038 0.66 0.67178
Target:  5'- cACGCGAUGGAcagCGcCGGCGcgaacgaagccgcGUCGcgCAu -3'
miRNA:   3'- -UGCGUUACCUa--GC-GCCGC-------------CAGCaaGU- -5'
26079 5' -54.8 NC_005342.2 + 19479 0.67 0.62841
Target:  5'- cGCGCGGUcGA-CGCGGCGcUCGggCAg -3'
miRNA:   3'- -UGCGUUAcCUaGCGCCGCcAGCaaGU- -5'
26079 5' -54.8 NC_005342.2 + 9354 0.67 0.62841
Target:  5'- aGCGCGAagcggcgcGGGUgCGCGGaCGGgcggCGUUCGu -3'
miRNA:   3'- -UGCGUUa-------CCUA-GCGCC-GCCa---GCAAGU- -5'
26079 5' -54.8 NC_005342.2 + 1313 0.67 0.617273
Target:  5'- cGCGCGAUGcuUCGCGGCGcUCGc--- -3'
miRNA:   3'- -UGCGUUACcuAGCGCCGCcAGCaagu -5'
26079 5' -54.8 NC_005342.2 + 8939 0.67 0.617273
Target:  5'- uGCGCGGgcUGGAUcgugcggccgugCGCGGCGGcgaccgacgcgCGUUCGc -3'
miRNA:   3'- -UGCGUU--ACCUA------------GCGCCGCCa----------GCAAGU- -5'
26079 5' -54.8 NC_005342.2 + 13873 0.67 0.617273
Target:  5'- -gGCAcgGGcugCGCGGCGGcCGUcgCGa -3'
miRNA:   3'- ugCGUuaCCua-GCGCCGCCaGCAa-GU- -5'
26079 5' -54.8 NC_005342.2 + 39816 0.68 0.606149
Target:  5'- uACGCGAUGGA-CGCGGCcgaccuGUCGc--- -3'
miRNA:   3'- -UGCGUUACCUaGCGCCGc-----CAGCaagu -5'
26079 5' -54.8 NC_005342.2 + 10056 0.68 0.583979
Target:  5'- aGCuCGGUcGGAUCGCGGUacaGGUCGUa-- -3'
miRNA:   3'- -UGcGUUA-CCUAGCGCCG---CCAGCAagu -5'
26079 5' -54.8 NC_005342.2 + 28494 0.69 0.508102
Target:  5'- cGCGC---GGGUCGCGGCGGcgCGg--- -3'
miRNA:   3'- -UGCGuuaCCUAGCGCCGCCa-GCaagu -5'
26079 5' -54.8 NC_005342.2 + 21231 0.71 0.402301
Target:  5'- gACGCAAUGGGUcaaguuccuggccggCGCGGCGGgcaUCGa--- -3'
miRNA:   3'- -UGCGUUACCUA---------------GCGCCGCC---AGCaagu -5'
26079 5' -54.8 NC_005342.2 + 15460 0.71 0.389394
Target:  5'- aGCGCAAcaGGGcugcUCGCGGCGGUCa---- -3'
miRNA:   3'- -UGCGUUa-CCU----AGCGCCGCCAGcaagu -5'
26079 5' -54.8 NC_005342.2 + 20473 1.08 0.001054
Target:  5'- cACGCAAUGGAUCGCGGCGGUCGUUCAg -3'
miRNA:   3'- -UGCGUUACCUAGCGCCGCCAGCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.