miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26083 3' -59.5 NC_005342.2 + 1231 0.66 0.498928
Target:  5'- aCGGCaugacgugcuccuuGGCGCGCCGccuggcgcgcguugcGUuaCGCgAUCGGCGu -3'
miRNA:   3'- -GCCG--------------CCGCGCGGC---------------UA--GCGgUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 33129 0.66 0.49792
Target:  5'- gCGGCGacuGCGCGCCGAaccguaGCCGcgaguccggCAGCa -3'
miRNA:   3'- -GCCGC---CGCGCGGCUag----CGGUa--------GUUGc -5'
26083 3' -59.5 NC_005342.2 + 30621 0.66 0.49792
Target:  5'- gCGuCGaGCGCGUCGAcgcUCGCCuucaucgCAACGa -3'
miRNA:   3'- -GCcGC-CGCGCGGCU---AGCGGua-----GUUGC- -5'
26083 3' -59.5 NC_005342.2 + 41415 0.66 0.49792
Target:  5'- gGGCGGCaacuucggGCgGCaCGG-CGCgAUCAACGa -3'
miRNA:   3'- gCCGCCG--------CG-CG-GCUaGCGgUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 30343 0.66 0.49792
Target:  5'- aCGGCaccgGGCGCgGCCGG-CGUCuucaCGACGa -3'
miRNA:   3'- -GCCG----CCGCG-CGGCUaGCGGua--GUUGC- -5'
26083 3' -59.5 NC_005342.2 + 29917 0.66 0.49792
Target:  5'- -aGCGGCGgGCag--CGCgAUCAGCGc -3'
miRNA:   3'- gcCGCCGCgCGgcuaGCGgUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 30127 0.66 0.49792
Target:  5'- uGGCa-CGCGCCGAUgGCg--CGACGg -3'
miRNA:   3'- gCCGccGCGCGGCUAgCGguaGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 41229 0.66 0.49792
Target:  5'- aGGC-GCGCGaCCGGggCGCCGU-GGCGc -3'
miRNA:   3'- gCCGcCGCGC-GGCUa-GCGGUAgUUGC- -5'
26083 3' -59.5 NC_005342.2 + 27713 0.66 0.49792
Target:  5'- uGuGCGGCGCgaucguagGCCaGUCGCgGUCGAUc -3'
miRNA:   3'- gC-CGCCGCG--------CGGcUAGCGgUAGUUGc -5'
26083 3' -59.5 NC_005342.2 + 23755 0.66 0.49792
Target:  5'- aCGGCGGCcagGCgGCCGGUa-CCGUCGcauucGCGc -3'
miRNA:   3'- -GCCGCCG---CG-CGGCUAgcGGUAGU-----UGC- -5'
26083 3' -59.5 NC_005342.2 + 19309 0.66 0.49792
Target:  5'- --uCGGCGCGCCGcugCGCac-CGACGg -3'
miRNA:   3'- gccGCCGCGCGGCua-GCGguaGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 8373 0.66 0.49792
Target:  5'- -uGCGGCaCGUaCGG-CGCCGUCAugGg -3'
miRNA:   3'- gcCGCCGcGCG-GCUaGCGGUAGUugC- -5'
26083 3' -59.5 NC_005342.2 + 30121 0.66 0.4949
Target:  5'- cCGGCGccggaccgaauucGCGCGCCGuagcgacugccucgCGCCAcgucuguuucaccgUCGACGu -3'
miRNA:   3'- -GCCGC-------------CGCGCGGCua------------GCGGU--------------AGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 2886 0.66 0.487885
Target:  5'- aCGuGCuGCGCgGCCG-UCGuaaCCGUCAGCGu -3'
miRNA:   3'- -GC-CGcCGCG-CGGCuAGC---GGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 33675 0.66 0.487885
Target:  5'- aCGGCGcCGCGCUGAUCGaCAU--GCu -3'
miRNA:   3'- -GCCGCcGCGCGGCUAGCgGUAguUGc -5'
26083 3' -59.5 NC_005342.2 + 44759 0.66 0.487885
Target:  5'- uGGCGGCGCGCaGA-CGCUG--AACa -3'
miRNA:   3'- gCCGCCGCGCGgCUaGCGGUagUUGc -5'
26083 3' -59.5 NC_005342.2 + 22174 0.66 0.487885
Target:  5'- cCGGCGGCa-GCCGG-CGgCGguUCGGCGg -3'
miRNA:   3'- -GCCGCCGcgCGGCUaGCgGU--AGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 14832 0.66 0.486887
Target:  5'- uCGGCGcGCagucgccGCGCCGcaggcAUCGCCGUUcuacGCGa -3'
miRNA:   3'- -GCCGC-CG-------CGCGGC-----UAGCGGUAGu---UGC- -5'
26083 3' -59.5 NC_005342.2 + 35148 0.66 0.477947
Target:  5'- uGGCGuGCGCaGUguuuagugCGGUCGugaCCGUCAACGu -3'
miRNA:   3'- gCCGC-CGCG-CG--------GCUAGC---GGUAGUUGC- -5'
26083 3' -59.5 NC_005342.2 + 20549 0.66 0.477947
Target:  5'- uGGCcGCGcCGCUGAUCGUCGgcgCGuCGg -3'
miRNA:   3'- gCCGcCGC-GCGGCUAGCGGUa--GUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.